[Cdd-commits] r1075 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Sep  9 09:59:44 2008
New Revision: 1075

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Adde migrate


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Sep  9 09:59:44 2008
@@ -2483,3 +2483,27 @@
  .
  This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
+
+Depends: migrate
+Homepage: http://popgen.scs.fsu.edu/Migrate-n.html
+License: to be clarified
+Responsible: BioLinux - Nathan S Haigh <n.haigh at sheffield.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: estimation of population sizes and gene flow using the coalescent
+ Migrate estimates effective population sizes and past migration rates
+ between n population assuming a migration matrix model with
+ asymmetric migration rates and different subpopulation sizes. Migrate
+ uses maximum likelihood or Bayesian inference to jointly estimate all
+ parameters. It can use the followind data types: sequence data using
+ Felsenstein's 84 model with or without site rate variation, single
+ nucleotide polymorphism data, microsatellite data using a stepwise
+ mutation model or a brownian motion mutation model, and
+ electrophoretic data using an 'infinite' allele model. The output can
+ contain: Estimates of all migration rates and all population sizes,
+ assuming constant mutation rates among loci or a gamma distributed
+ mutation rate among loci. Profile likelihood tables, Percentiles,
+ Likelihood-ratio tests, and simple plots of the log-likelihood
+ surfaces for all populations and all loci.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html