[Cdd-commits] r1076 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Tue Sep  9 12:27:03 2008
New Revision: 1076

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added mrbayes


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Tue Sep  9 12:27:03 2008
@@ -2507,3 +2507,27 @@
  .
  This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
+
+Depends: mrbayes
+Homepage: http://mrbayes.csit.fsu.edu/
+License: GPL
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: Bayesian estimation of phylogeny
+ MrBayes is a program for the Bayesian estimation of
+ phylogeny. Bayesian inference of phylogeny is based upon a quantity
+ called the posterior probability distribution of trees, which is the
+ probability of a tree conditioned on the observations. The
+ conditioning is accomplished using Bayes's theorem. The posterior
+ probability distribution of trees is impossible to calculate
+ analytically; instead, MrBayes uses a simulation technique called
+ Markov chain Monte Carlo (or MCMC) to approximate the posterior
+ probabilities of trees.
+ .
+ The program takes as input a character matrix in a NEXUS file
+ format. The output is several files with the parameters that were
+ sampled by the MCMC algorithm. MrBayes can summarize the information
+ in these files for the user. The program features include:
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html