[Cdd-commits] r1079 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Sep 10 07:54:49 2008
New Revision: 1079

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added oligoarrayaux


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Sep 10 07:54:49 2008
@@ -2566,3 +2566,31 @@
  .
  This package is included into BioLinux distribution
  http://envgen.nox.ac.uk/biolinux.html
+
+Depends: oligoarrayaux
+Homepage: http://dinamelt.bioinfo.rpi.edu/OligoArrayAux.php
+License: non-free (fre academical use)
+Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: Prediction of Melting Profiles for Nucleic Acids
+ OligoArrayAux is a subset of the UNAFold package for use with
+ OligoArray (http://berry.engin.umich.edu/oligoarray2_1/). OligoArray
+ is a free software that computes gene specific oligonucleotides for
+ genome-scale oligonucleotide microarray construction.  (It is not
+ really specified what they mean with "free software". You can
+ download the source code after registration: "registration is the
+ only way for me to keep trace of OligoArray users and be able to send
+ you a bug fix or a new release".)
+ .
+ The original UNAFold server is available at
+ http://dinamelt.bioinfo.rpi.edu/download.php and you should probably
+ read http://dinamelt.bioinfo.rpi.edu/ if you want to know more about
+ "Prediction of Melting Profiles for Nucleic Acids".
+ .
+ Finally it is hard to find some documentation what OligoArrayAux is
+ really doing because it is only specified into relation to OligoArray
+ (as precondition) and UNAFold (as subset of this) but BioLinux
+ distribution http://envgen.nox.ac.uk/biolinux.html decided to package
+ this and so it might make soem sense to list it here - further
+ investigation is needed.
+