[Cdd-commits] r1080 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: tille
Date: Wed Sep 10 11:07:55 2008
New Revision: 1080

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Added omegamap


Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Wed Sep 10 11:07:55 2008
@@ -2594,3 +2594,24 @@
  this and so it might make soem sense to list it here - further
  investigation is needed.
 
+Depends: omegamap:
+Homepage: http://www.danielwilson.me.uk/software.html
+License: to be clarified
+Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
+Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
+Pkg-Description: detecting natural selection and recombination in DNA or RNA sequences
+ OmegaMap is a program for detecting natural selection and
+ recombination in DNA or RNA sequences. It is based on a model of
+ population genetics and molecular evolution. The signature of natural
+ selection is detected using the dN/dS ratio (which measures the
+ relative excess of non-synonymous to synonymous polymorphism) and the
+ signature of recombination is detected from the patterns of linkage
+ disequilibrium. The model and the method of estimation are described
+ in
+  Wilson, D. J. and G. McVean (2006)
+  Estimating diversifying selection and functional constraint in the
+  presence of recombination.
+  Genetics doi:10.1534/genetics.105.044917.
+ .
+ This package is included into BioLinux distribution
+ http://envgen.nox.ac.uk/biolinux.html