[Cdd-commits] r1327 - projects/science/trunk/debian-science/tasks

CDD Subversion Commit noreply at alioth.debian.org
Wed Jan 28 07:18:08 UTC 2009


Author: tille
Date: Wed Jan 28 07:18:06 2009
New Revision: 1327

Modified:
   projects/science/trunk/debian-science/tasks/astronomy
   projects/science/trunk/debian-science/tasks/biology
   projects/science/trunk/debian-science/tasks/chemistry
   projects/science/trunk/debian-science/tasks/dataacquisition
   projects/science/trunk/debian-science/tasks/engineering
   projects/science/trunk/debian-science/tasks/geography
   projects/science/trunk/debian-science/tasks/mathematics
   projects/science/trunk/debian-science/tasks/physics
   projects/science/trunk/debian-science/tasks/robotics
   projects/science/trunk/debian-science/tasks/statistics
   projects/science/trunk/debian-science/tasks/typesetting
   projects/science/trunk/debian-science/tasks/viewing
Log:
Science-statistics: Depends: r-cran-msm; removed trailing spaces


Modified: projects/science/trunk/debian-science/tasks/astronomy
==============================================================================
--- projects/science/trunk/debian-science/tasks/astronomy	(original)
+++ projects/science/trunk/debian-science/tasks/astronomy	Wed Jan 28 07:18:06 2009
@@ -34,7 +34,7 @@
  around it. It is capable of showing only a subset of the stars in a
  given data file, and only those within a given distance of the center
  of the display. Also, it shows lines between stars that are closer than
- a given distance. 
+ a given distance.
  .
  This project used to be an official Debian in Etch but vanished later
  from the Debian pool of packaged software - for reasons that should be
@@ -128,15 +128,15 @@
 License: GPL
 Responsible: Alastair McKinstry <mckinstry at debian.org>
 Pkg-Description: the European Southern Observatory Munich Image Data Analysis System
- The ESO-MIDAS system provides general tools for image processing and 
- data reduction with emphasis on astronomical applications including 
- imaging and special reduction packages for ESO instrumentation at La 
- Silla and the VLT at Paranal. In addition it contains applications 
- packages for stellar and surface photometry, image sharpening and 
+ The ESO-MIDAS system provides general tools for image processing and
+ data reduction with emphasis on astronomical applications including
+ imaging and special reduction packages for ESO instrumentation at La
+ Silla and the VLT at Paranal. In addition it contains applications
+ packages for stellar and surface photometry, image sharpening and
  decomposition, statistics and various others.
  .
- The official name, ESO-MIDAS, is a registered trademark. ESO-MIDAS is 
- available under the GNU General Public License (GPL), and can be 
+ The official name, ESO-MIDAS, is a registered trademark. ESO-MIDAS is
+ available under the GNU General Public License (GPL), and can be
  implemented on OpenVMS and UNIX (Linux) systems.
 
 Depends: boinc-app-milkyway
@@ -145,17 +145,17 @@
 WNPP: 512705
 Responsible: Thibaut VARENE <varenet at debian.org>
 Pkg-Description: Help discover structures in the MilkyWay Galaxy
- The goal of Milkyway at Home is to use the BOINC platform to harness 
- volunteered computing resources in creating a highly accurate three 
- dimensional model of the Milky Way galaxy using data gathered by the 
- Sloan Digital Sky Survey. This project enables research in both 
+ The goal of Milkyway at Home is to use the BOINC platform to harness
+ volunteered computing resources in creating a highly accurate three
+ dimensional model of the Milky Way galaxy using data gathered by the
+ Sloan Digital Sky Survey. This project enables research in both
  astroinformatics and computer science.
  .
- In computer science, the project is investigating different optimization 
- methods which are resilient to the fault-prone, heterogeneous and 
- asynchronous nature of Internet computing; such as evolutionary and 
- genetic algorithms, as well as asynchronous newton methods. While in 
- astroinformatics, Milkyway at Home is generating highly accurate three 
- dimensional models of the Sagittarius stream, which provides knowledge 
- about how the Milky Way galaxy was formed and how tidal tails are 
+ In computer science, the project is investigating different optimization
+ methods which are resilient to the fault-prone, heterogeneous and
+ asynchronous nature of Internet computing; such as evolutionary and
+ genetic algorithms, as well as asynchronous newton methods. While in
+ astroinformatics, Milkyway at Home is generating highly accurate three
+ dimensional models of the Sagittarius stream, which provides knowledge
+ about how the Milky Way galaxy was formed and how tidal tails are
  created when galaxies merge.

Modified: projects/science/trunk/debian-science/tasks/biology
==============================================================================
--- projects/science/trunk/debian-science/tasks/biology	(original)
+++ projects/science/trunk/debian-science/tasks/biology	Wed Jan 28 07:18:06 2009
@@ -18,7 +18,7 @@
  Bauble is a software application to help you manage a collection of
  botanical specimens. It is intended to be used by botanic gardens, herbaria,
  arboreta, etc. to manage their collection information. It is a open, free,
- cross-platform alternative to BG-Base and similiar software. 
+ cross-platform alternative to BG-Base and similiar software.
  .
  Features:
   * Bauble is designed to be simple, elegant and intuitive.

Modified: projects/science/trunk/debian-science/tasks/chemistry
==============================================================================
--- projects/science/trunk/debian-science/tasks/chemistry	(original)
+++ projects/science/trunk/debian-science/tasks/chemistry	Wed Jan 28 07:18:06 2009
@@ -98,8 +98,7 @@
  and Kohn-Sham density functional theory (KS DFT), second-order
  Moller-Plesset perturbation theory (MP2), coupled cluster singles and
  doubles (CCSD) method, as well as explicitly correlated R12 methods.
- The following software packages use Libint: 
- .
+ The following software packages use Libint:
  .
  Improves mpqc (#409025) and psi3.
 

Modified: projects/science/trunk/debian-science/tasks/dataacquisition
==============================================================================
--- projects/science/trunk/debian-science/tasks/dataacquisition	(original)
+++ projects/science/trunk/debian-science/tasks/dataacquisition	Wed Jan 28 07:18:06 2009
@@ -76,7 +76,7 @@
   * As a platform for building device control servers to be used by
     other applications.
   * As a way of extending other control systems and of glueing disparate
-    control systems together. 
+    control systems together.
 
 Depends: epics
 Homepage: http://www.aps.anl.gov/epics/

Modified: projects/science/trunk/debian-science/tasks/engineering
==============================================================================
--- projects/science/trunk/debian-science/tasks/engineering	(original)
+++ projects/science/trunk/debian-science/tasks/engineering	Wed Jan 28 07:18:06 2009
@@ -59,34 +59,34 @@
 Responsible: Christophe Prud'homme <prudhomm at debian.org>
 Pkg-URL: http://svn.debian.org/wsvn/pkg-scicomp/openturns/trunk/?rev=0&sc=0
 Pkg-Description: uncertainty treatment and reliability analyses
- OpenTURNS is an Open source initiative to Treat Uncertainties, Risks'N 
- Statistics in a structured industrial approach. 
+ OpenTURNS is an Open source initiative to Treat Uncertainties, Risks'N
+ Statistics in a structured industrial approach.
  Since the beginning of 2005, a partnership of three companies has been working
- on building together a tool designed to perform uncertainty treatment and 
+ on building together a tool designed to perform uncertainty treatment and
  reliability analyses.
  .
- OpenTURNS is a Unix/Linux software with three main components : 
+ OpenTURNS is a Unix/Linux software with three main components :
  .
- - a scientific C++ library including an internal data model and algorithms 
+ - a scientific C++ library including an internal data model and algorithms
  dedicated to the treatment of uncertainties. The main function of that library
- is giving to specific applications all the functionalities needed to treat 
- uncertainties in studies. Targeted users are all engineers who want to 
- introduce the probabilistic dimension in their so far deterministic studies. 
+ is giving to specific applications all the functionalities needed to treat
+ uncertainties in studies. Targeted users are all engineers who want to
+ introduce the probabilistic dimension in their so far deterministic studies.
  .
  - an independent application with a graphical user interface. This application
- was built to become the work environment for the specialist of the treatment 
- of uncertainties. Targeted users are once again industrial practitioners: 
+ was built to become the work environment for the specialist of the treatment
+ of uncertainties. Targeted users are once again industrial practitioners:
  those who identify the treatment of uncertainties as a full task, which can be
- spread to multiple engineering domains. 
+ spread to multiple engineering domains.
  .
  - a python module with high level operators in the probabilistic and statistical
- field. The interest of this language is to be both a powerful scientific 
- language (capable of using C++ libraries), and a user friendly interpreted 
- language like Matlab(tm) one. This python module was designed to make the 
- development of prototypes easier (in order to test new algorithms and methods 
- for example), to become an easy-to-use support for educational works. This 
- module intends to become a natural environment capable of integrating new 
- developments within the field of uncertainty and sensitivity analysis. The 
+ field. The interest of this language is to be both a powerful scientific
+ language (capable of using C++ libraries), and a user friendly interpreted
+ language like Matlab(tm) one. This python module was designed to make the
+ development of prototypes easier (in order to test new algorithms and methods
+ for example), to become an easy-to-use support for educational works. This
+ module intends to become a natural environment capable of integrating new
+ developments within the field of uncertainty and sensitivity analysis. The
  targeted users are here research centres and the academic community.
 
 Depends: code-aster
@@ -109,9 +109,9 @@
 Responsible: Sylvestre Ledru <sylvestre.ledru at inria.fr>
 Pkg-URL: http://svn.debian.org/viewsvn/debian-science/packages/ecs/
 Pkg-Description: Computational fluid dynamics software
- The basic capabilities of Code_Saturne enable the handling of either 
+ The basic capabilities of Code_Saturne enable the handling of either
  incompressible or expandable flows with or without heat transfer and
  turbulence. Dedicated modules are available for specific physics such as
- radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...), 
- magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange 
+ radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...),
+ magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange
  approach with two-way coupling), or atmospheric flows.

Modified: projects/science/trunk/debian-science/tasks/geography
==============================================================================
--- projects/science/trunk/debian-science/tasks/geography	(original)
+++ projects/science/trunk/debian-science/tasks/geography	Wed Jan 28 07:18:06 2009
@@ -23,7 +23,7 @@
  on-the-fly, map composition, and a number of other features via a plugin
  interface. QGIS also supports display of various georeferenced raster and
  Digital Elevation Model (DEM) formats including GeoTIFF, Arc/Info ASCII Grid,
- and USGS ASCII DEM. 
+ and USGS ASCII DEM.
  .
  This project used to be an official Debian in Etch but vanished later
  from the Debian pool of packaged software because it had a lot of

Modified: projects/science/trunk/debian-science/tasks/mathematics
==============================================================================
--- projects/science/trunk/debian-science/tasks/mathematics	(original)
+++ projects/science/trunk/debian-science/tasks/mathematics	Wed Jan 28 07:18:06 2009
@@ -55,9 +55,9 @@
 Responsible: none
 Pkg-URL: http://wiki.sagemath.org/DebianSAGE
 Pkg-Description: SAGE is a computer algebra system written in python.
- SAGE is Software for Algebra and Geometry Experimentation. 
- Is a computer algebra system written in Python, with uses free open source 
- mathematics software. Also it includes interfaces for applications like 
+ SAGE is Software for Algebra and Geometry Experimentation.
+ Is a computer algebra system written in Python, with uses free open source
+ mathematics software. Also it includes interfaces for applications like
  maxima, octave and many others.
 
 Depends: geogebra

Modified: projects/science/trunk/debian-science/tasks/physics
==============================================================================
--- projects/science/trunk/debian-science/tasks/physics	(original)
+++ projects/science/trunk/debian-science/tasks/physics	Wed Jan 28 07:18:06 2009
@@ -1,7 +1,7 @@
 Task: Physics
 Description: Debian Science Physics packages
  This metapackage will install Debian Science packages related to Physics.
- You might also be interested in the debtag field::physics and, depending on 
+ You might also be interested in the debtag field::physics and, depending on
  your focus, in education-physics metapackage.
 
 Depends: cernlib, geant321, paw++, paw
@@ -44,7 +44,7 @@
 Depends: gpiv, gpivtools
 
 Depends: maxima
-Why: Symbolic maths 
+Why: Symbolic maths
 
 Depends: python-sympy
 Why: Symbolic maths
@@ -181,12 +181,12 @@
 License: GPL
 Homepage: http://www.opencfd.co.uk/openfoam/
 Pkg-Description: Computational fluid dynamics application
- The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can 
- simulate anything from complex fluid flows involving chemical 
- reactions, turbulence and heat transfer, to solid dynamics, 
+ The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can
+ simulate anything from complex fluid flows involving chemical
+ reactions, turbulence and heat transfer, to solid dynamics,
  electromagnetics and the pricing of financial options.
 
-    
+
 Depends: jfreemesh
 Homepage: http://dev.artenum.com/projects/JFreeMesh
 License: QPL
@@ -204,5 +204,5 @@
 Homepage: http://dev.spis.org/projects/spine/home/spis
 License: GPL
 Pkg-Description: Software toolkit for spacecraft-plasma interactions modelling
- JSPIS stands for Spacecraft Plasma Interaction System. SPIS project aims at 
- developing a software toolkit for spacecraft-plasma interactions modelling. 
+ JSPIS stands for Spacecraft Plasma Interaction System. SPIS project aims at
+ developing a software toolkit for spacecraft-plasma interactions modelling.

Modified: projects/science/trunk/debian-science/tasks/robotics
==============================================================================
--- projects/science/trunk/debian-science/tasks/robotics	(original)
+++ projects/science/trunk/debian-science/tasks/robotics	Wed Jan 28 07:18:06 2009
@@ -35,10 +35,10 @@
 License: GPL
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-Description: hard real-time network protocol stack
- RTnet is an Open Soure hard real-time network protocol stack 
- for Xenomai and RTAI (real-time Linux extensions). It makes use of standard 
- Ethernet hardware and supports several popular NIC chip sets, including 
- Gigabit Ethernet. Moreover, Ethernet-over-1394 support is available based on 
+ RTnet is an Open Soure hard real-time network protocol stack
+ for Xenomai and RTAI (real-time Linux extensions). It makes use of standard
+ Ethernet hardware and supports several popular NIC chip sets, including
+ Gigabit Ethernet. Moreover, Ethernet-over-1394 support is available based on
  the RT-FireWire protocol stack.
 
 Depends: orca
@@ -46,10 +46,10 @@
 License: LGPL and GPL
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-Description: developing component-based robotic systems
- Orca is an open-source framework for developing 
- component-based robotic systems. It provides the means for defining and 
- developing the building-blocks which can be pieced together to form 
- arbitrarily complex robotic systems, from single vehicles to distributed 
+ Orca is an open-source framework for developing
+ component-based robotic systems. It provides the means for defining and
+ developing the building-blocks which can be pieced together to form
+ arbitrarily complex robotic systems, from single vehicles to distributed
  sensor networks.
 
 Depends: roboop
@@ -57,10 +57,10 @@
 License: GPL
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-Description: synthesis, and simulation of robotic manipulator models
- ROBOOP is a C++ robotics object oriented programming toolbox 
- suitable for synthesis, and simulation of robotic manipulator models in an 
- environment that provides ``MATLAB like'' features for the treatment of 
- matrices. Its is a portable tool that does not require the use of commercial 
+ ROBOOP is a C++ robotics object oriented programming toolbox
+ suitable for synthesis, and simulation of robotic manipulator models in an
+ environment that provides ``MATLAB like'' features for the treatment of
+ matrices. Its is a portable tool that does not require the use of commercial
  software.
 
 Depends: orocos-rtt
@@ -80,12 +80,12 @@
 License: LGPL
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-Description: Kinematics and Dynamics Library
- The Kinematics and Dynamics Library (KDL) develops an 
- application independent framework for modelling and computation of kinematic 
- chains, such as robots, biomechanical human models, computer-animated 
- figures, machine tools, etc. It provides class libraries for geometrical 
- objects (point, frame, line,... ), kinematic chains of various families 
- (serial, humanoid, parallel, mobile,... ), and their motion specification and 
+ The Kinematics and Dynamics Library (KDL) develops an
+ application independent framework for modelling and computation of kinematic
+ chains, such as robots, biomechanical human models, computer-animated
+ figures, machine tools, etc. It provides class libraries for geometrical
+ objects (point, frame, line,... ), kinematic chains of various families
+ (serial, humanoid, parallel, mobile,... ), and their motion specification and
  interpolation.
 
 Depends: orocos-ocl
@@ -94,9 +94,9 @@
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-URL: http://svn.fmtc.be/debian
 Pkg-Description: Orocos Component Library
- The Orocos Component Library uses the Real-Time Toolkit (RTT) 
- for constructing all its components. Some components use the Kinematics and 
- Dynamics Library (KDL), the Bayesian Filtering Library (BFL) or other 
+ The Orocos Component Library uses the Real-Time Toolkit (RTT)
+ for constructing all its components. Some components use the Kinematics and
+ Dynamics Library (KDL), the Bayesian Filtering Library (BFL) or other
  libraries.
 
 Depends: orocos-bfl
@@ -105,10 +105,10 @@
 Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
 Pkg-URL: http://people.mech.kuleuven.be/~tdelaet/bfl
 Pkg-Description: framework for inference in Dynamic Bayesian Networks
- The Bayesian Filtering Library (BFL) provides an application 
- independent framework for inference in Dynamic Bayesian Networks, i.e., 
- recursive information processing and estimation algorithms based on Bayes' 
- rule, such as (Extended) Kalman Filters, Particle Filters (or Sequential 
- Monte Carlo methods), etc. These algorithms can, for example, be run on top 
- of the Realtime Services, or be used for estimation in Kinematics & Dynamics 
+ The Bayesian Filtering Library (BFL) provides an application
+ independent framework for inference in Dynamic Bayesian Networks, i.e.,
+ recursive information processing and estimation algorithms based on Bayes'
+ rule, such as (Extended) Kalman Filters, Particle Filters (or Sequential
+ Monte Carlo methods), etc. These algorithms can, for example, be run on top
+ of the Realtime Services, or be used for estimation in Kinematics & Dynamics
  applications.

Modified: projects/science/trunk/debian-science/tasks/statistics
==============================================================================
--- projects/science/trunk/debian-science/tasks/statistics	(original)
+++ projects/science/trunk/debian-science/tasks/statistics	Wed Jan 28 07:18:06 2009
@@ -33,8 +33,9 @@
          These packages formerly mentioned above do not seem to exist.
 
 Depends: r-other-gking-matchit
- 
+
+Depends: r-cran-msm
+
 Depends: psignifit, python-stats
 
 Suggests: science-mathematics
-

Modified: projects/science/trunk/debian-science/tasks/typesetting
==============================================================================
--- projects/science/trunk/debian-science/tasks/typesetting	(original)
+++ projects/science/trunk/debian-science/tasks/typesetting	Wed Jan 28 07:18:06 2009
@@ -19,7 +19,7 @@
 Why: TeXmacs
 
 Depends: auctex
-Why: Emacs editing mode for latex 
+Why: Emacs editing mode for latex
 
 Depends: xfig, transfig
 

Modified: projects/science/trunk/debian-science/tasks/viewing
==============================================================================
--- projects/science/trunk/debian-science/tasks/viewing	(original)
+++ projects/science/trunk/debian-science/tasks/viewing	Wed Jan 28 07:18:06 2009
@@ -50,10 +50,10 @@
 WNPP: 473044
 Responsible: Dominique Belhachemi <domibel at cs.tu-berlin.de>
 Pkg-Description: Tools to process and visualize scientific data and images
- Teem is a coordinated group of libraries for representing, processing, 
- and visualizing scientific raster data. Teem includes command-line tools 
- that permit the library functions to be quickly applied to files and 
- streams, without having to write any code. The most important and useful 
+ Teem is a coordinated group of libraries for representing, processing,
+ and visualizing scientific raster data. Teem includes command-line tools
+ that permit the library functions to be quickly applied to files and
+ streams, without having to write any code. The most important and useful
  libraries in Teem are:
  .
   * Nrrd (and the unu command-line tool on top of it) supports a range of
@@ -65,7 +65,7 @@
   * Mite: a multi-threaded ray-casting volume render with transfer functions
     based on any quantity Gage can measure
   * Ten: for estimating, processing, and visualizing diffusion tensor fields,
-    including fiber tractography methods. 
+    including fiber tractography methods.
 
 
 Depends: cassandra
@@ -74,11 +74,11 @@
 Pkg-Description: VTK/Java based 3D Scientific Data Viewer
  Cassandra is a open source scientific data viewer based on VTK. Cassandra
  provides a dynamic interaction with the VTK pipeline and enables to load
- plugins dynamically in order to perform specific tasks in data manipulation 
+ plugins dynamically in order to perform specific tasks in data manipulation
  and visualisation.
 
  Cassandra is developed by Artenum in the frame of its internal Research and
- Development program and illustrates its skills in scientific visualisation 
+ Development program and illustrates its skills in scientific visualisation
  and VTK technology. Cassandra has already been used for many applications in
  scientific computing and space environment analysis.
 



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