[Cdd-commits] r1328 - projects/med/trunk/debian-med/tasks
CDD Subversion Commit
noreply at alioth.debian.org
Fri Jan 30 07:09:51 UTC 2009
Author: tille
Date: Fri Jan 30 07:09:50 2009
New Revision: 1328
Modified:
projects/med/trunk/debian-med/tasks/bio
Log:
Start experimenting with more fine grained information: unofficial or experimental package or packaging stuff (marked via Vcs Fields)
Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Jan 30 07:09:50 2009
@@ -84,7 +84,7 @@
Responsible: Manuel Prinz <debian at pinguinkiste.de>
License: GPL
WNPP: 416269
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/pdb2pqr/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/pdb2pqr/trunk/
Pkg-Description: Converts Protein Data Bank (PDB) files to PQR
From the PDB2PQR hompage: "PDB2PQR is a Python software package that
automates many of the common tasks of preparing structures for
@@ -103,7 +103,7 @@
Responsible: Steffen Moeller <steffen_moeller at gmx.de>
License: GPL 2+
WNPP: #492044
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-genabel/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-other-genabel/trunk/
Pkg-Description: genome-wide SNP association analysis
A package for genome-wide association analysis between quantitative
or binary traits and single-nucleiotide polymorphisms (SNPs).
@@ -112,7 +112,7 @@
Homepage: http://meme.nbcr.net/meme/
Responsible: Steffen Moeller <moeller at debian.org>
License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/meme/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/meme/trunk/
Pkg-Description: motif discovery and search
MEME is a tool for discovering motifs in a group of related DNA or protein
sequences. A motif is a sequence pattern that occurs repeatedly in a group
@@ -233,7 +233,7 @@
Responsible: Charles Plessy <plessy at debian.org>
License: GPL and others
WNPP: 461504
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/tacg/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/tacg/trunk/
Pkg-Description: command line program for finding patterns in nucleic acids
tacg is a character-based, command line tool for unix-like operating systems
for pattern-matching in nucleic acids and performing some of the basic protein
@@ -362,7 +362,7 @@
Responsible: Andreas Tille <tille at debian.org>
License: GPL
WNPP: 500106
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/agdbnet/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/agdbnet/trunk/
Pkg-Description: antigen sequence database software for web-based bacterial typing
AgdbNet is antigen sequence database software for web-based bacterial
typing. The software facilitates simultaneous BLAST querying of multiple
@@ -385,7 +385,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
License: Free
WNPP: 465994
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/gamgi/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gamgi/trunk/
Pkg-Description: general atomistic modelling graphic interface
GAMGI provides a graphical user interface for the handling
of molecular structures.
@@ -394,7 +394,7 @@
Homepage: http://www.ebi.ac.uk/biomart/
Responsible: Steffen Moeller <moeller at debian.org>
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/martj/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/martj/trunk/
Pkg-Description: distributed data integration system for biological data
BioMart is a simple, distributed data integration system with
powerful query capabilities. The BioMart data model has been applied
@@ -406,7 +406,7 @@
License: non-free
WNPP: 286167
Responsible: Steffen Moeller <moeller at debian.org>
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/cluster3/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/cluster3/trunk/
Pkg-Description: find clustering solutions for genome data
Cluster 3.0 is an enhanced version of Cluster, which was originally
developed by Michael Eisen while at Stanford University. The main
@@ -422,7 +422,7 @@
Responsible: Vincent Fourmond <fourmond at debian.org>
License: LGPL
WNPP: 512930
-Pkg-URL: http://svn.debian.org/wsvn/pkg-escience/jmol/trunk/debian/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/pkg-escience/jmol/trunk/debian/
Pkg-Description: viewer for chemical structures in 3D
Jmol is a Java molecular viewer for three-dimensional chemical structures.
Features include reading a variety of file types and output from quantum
@@ -445,7 +445,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
License: GPL
WNPP: 243771
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/treeview/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/treeview/trunk/
Pkg-Description: Java re-implementation of Michael Eisen's TreeView
TreeView creates a matrix-like display of expression data, known as
Eisen clustering. The original implementation was a Windows program
@@ -462,7 +462,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 221492
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/smile/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/smile/trunk/
Pkg-Description: infer motifs in a set of sequences
SMILE is a tool that infers motifs in a set of sequences, according to some
criteria. It was first made to infer exceptional sites as binding sites in
@@ -637,7 +637,7 @@
Homepage: http://www.biojava.org/dazzle
Responsible: Steffen Moeller <moeller at debian.org>
License: LGPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/dazzle/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dazzle/trunk/
Pkg-Description: Java-based DAS server
Dazzle is a general purpose server for the Distributed Annotation System
(DAS) protocol. It is implemented as a Java servlet, using the BioJava
@@ -653,7 +653,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 241195
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/ecell/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ecell/trunk/
Pkg-Description: Concept and environment for constructing virtual cells on computers
The E-Cell Project is an international research project aiming at
developing necessary theoretical supports, technologies and software
@@ -678,7 +678,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 299856
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/ciols/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ciols/trunk/
Pkg-Description: coiled coil secondary structure prediction
The program predicts the coiled coil secondary structure predictions
from protein sequences. The algorithm was published in
@@ -690,7 +690,7 @@
Responsible: Steffen Moeller <moeller at debian.org>
WNPP: 311421
License: DFSG free
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/haploview/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/haploview/trunk/
Pkg-Description: Analysis and visualization of LD and haplotype maps
This tools assists in the analysis of the nucleotide
variation in a population. Such investigations are performed
@@ -787,7 +787,7 @@
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 435915
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/mira/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mira/trunk/
Pkg-Description: Whole Genome Shotgun and EST Sequence Assembler
The mira genome fragment assembler is a specialised assembler for
sequencing projects classified as 'hard' due to high number of similar
@@ -806,7 +806,7 @@
Responsible: Charles Plessy <plessy at debian.org>
WNPP: 426489
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/phylographer/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/phylographer/trunk/
Pkg-Description: Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary
relationships within families of homologous genes or proteins
@@ -1135,7 +1135,7 @@
License: GPL
WNPP: 221492
Responsible: Steffen Moeller <moeller at debian.org>
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/smile/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/smile/trunk/
Pkg-Description: Find statistically significant patterns in sequences
Smile determines sequence motifs on the basis of a set of DNA, RNA or
protein sequences. The work was originally described in the Journal of
@@ -1324,7 +1324,7 @@
License: CBIL Software and Data License (Apache-like)
WNPP: 476209
Responsible: Charles Plessy <plessy at debian.org>
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/mage2tab/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mage2tab/trunk/
Pkg-Description: MAGE-MLv1 converter and visualiser
This tool-kit is part of MR_T, a framework for import or export various of
MAGE (MicroArray Gene Expression) documents (MAGE-MLv1, MAGE-TAB, SOFT,
@@ -1382,7 +1382,7 @@
Depends: murasaki
Homepage: http://murasaki.dna.bio.keio.ac.jp/
License: GPL
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/murasaki/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/murasaki/trunk/
Pkg-Description: homology detection tool across multiple large genomes
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
@@ -1589,7 +1589,7 @@
License: GPL-2+
WNPP: 487026
Responsible: Charles Plessy <plessy at debian.org>
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/velvet/trunk/
Pkg-Description: Nucleic acid sequence assembler for very short reads
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
@@ -1661,7 +1661,7 @@
License: Apache License V2.0
WNPP: 489983
Responsible: Charles Plessy <plessy at debian.org>
-Pkg-URL: http://svn.debian.org/wsvn/debian-med/trunk/packages/srf/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/srf/trunk/
Pkg-Description: C++ implementation of the SRF format for DNA sequence data
SRF (sort for Sequence Read Format) is a generic format capable of storing
data generated by any DNA sequencing technology. Hence it has sufficient
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