[simbody] branch master updated (26f151b -> 86ede9e)
Jose Luis Rivero
jrivero-guest at moszumanska.debian.org
Mon Jan 12 22:55:11 UTC 2015
This is an automated email from the git hooks/post-receive script.
jrivero-guest pushed a change to branch master
in repository simbody.
from 26f151b Use RelwithDebInfo to build
adds 9448cf3 Imported Upstream version 3.5.1
adds 5fadd71 Imported Upstream version 3.5.1
adds 66f6d87 Update cleanup script
adds 0b45ed6 Missed the rm command
adds fba0f9d Run cleanup-script.sh
new 2c6bd63 Merge branch 'dfsg_clean'
new 4611841 Update debian files from 3.4 -> 3.5
new 86ede9e Update changelog with version 3.5.1
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 24 -
ApiDoxygen.cmake | 6 +-
CHANGELOG.md | 115 +
CMakeLists.txt | 265 +-
CONTRIBUTING.md | 394 +
ChangeLog.txt | 107 -
Doxyfile.in | 110 +-
LICENSE => LICENSE.txt | 0
Platform/CMakeLists.txt | 65 +-
README.md | 471 +-
.../include/SimTKcommon/internal/BigMatrix.h | 122 +-
.../include/SimTKcommon/internal/MatrixBase.h | 71 +-
.../include/SimTKcommon/internal/MatrixHelper.h | 11 +-
.../include/SimTKcommon/internal/Matrix_.h | 6 +-
.../include/SimTKcommon/internal/RowVectorBase.h | 34 +-
.../include/SimTKcommon/internal/VectorBase.h | 40 +-
.../include/SimTKcommon/internal/Vector_.h | 6 +-
SimTKcommon/BigMatrix/src/MatrixHelperRep.h | 11 +-
SimTKcommon/BigMatrix/src/MatrixHelperRep_Full.h | 4 +-
SimTKcommon/BigMatrix/src/MatrixHelperRep_Tri.h | 4 +-
SimTKcommon/BigMatrix/src/MatrixHelperRep_Vector.h | 6 +-
SimTKcommon/CMakeLists.txt | 29 +-
.../SimTKcommon/internal/DecorativeGeometry.h | 5 +-
.../include/SimTKcommon/internal/PolygonalMesh.h | 54 +-
SimTKcommon/Geometry/src/DecorativeGeometryRep.h | 9 +-
SimTKcommon/Geometry/src/PolygonalMesh.cpp | 402 +-
.../include/SimTKcommon/internal/CoordinateAxis.h | 8 +-
.../include/SimTKcommon/internal/MassProperties.h | 15 +-
.../include/SimTKcommon/internal/Rotation.h | 2289 +--
.../include/SimTKcommon/internal/SpatialAlgebra.h | 4 +-
.../include/SimTKcommon/internal/Transform.h | 22 +-
SimTKcommon/Mechanics/src/Quaternion.cpp | 2 +-
SimTKcommon/Mechanics/src/Rotation.cpp | 215 +-
SimTKcommon/Polynomial/src/rpoly.cpp | 19 +
SimTKcommon/Random/src/SFMT-alti.h | 68 +-
SimTKcommon/Random/src/SFMT-params.h | 8 +-
SimTKcommon/Random/src/SFMT-params11213.h | 66 +-
SimTKcommon/Random/src/SFMT-params1279.h | 66 +-
SimTKcommon/Random/src/SFMT-params132049.h | 66 +-
SimTKcommon/Random/src/SFMT-params19937.h | 66 +-
SimTKcommon/Random/src/SFMT-params216091.h | 66 +-
SimTKcommon/Random/src/SFMT-params2281.h | 66 +-
SimTKcommon/Random/src/SFMT-params4253.h | 66 +-
SimTKcommon/Random/src/SFMT-params44497.h | 66 +-
SimTKcommon/Random/src/SFMT-params607.h | 66 +-
SimTKcommon/Random/src/SFMT-params86243.h | 66 +-
SimTKcommon/Random/src/SFMT-sse2.h | 62 +-
SimTKcommon/Random/src/SFMT.cpp | 216 +-
SimTKcommon/Scalar/include/SimTKcommon/Scalar.h | 2 +-
.../Scalar/include/SimTKcommon/internal/NTraits.h | 13 +-
.../Scalar/include/SimTKcommon/internal/negator.h | 2 +-
.../include/SimTKcommon/internal/Event.h | 1 +
.../include/SimTKcommon/internal/Measure.h | 4 +-
.../SimTKcommon/internal/MeasureImplementation.h | 31 +-
.../include/SimTKcommon/internal/Stage.h | 6 +-
.../include/SimTKcommon/internal/State.h | 522 +-
.../SimTKcommon/internal/StateImpl.h} | 1795 +-
.../include/SimTKcommon/internal/Subsystem.h | 542 +-
.../include/SimTKcommon/internal/SubsystemGuts.h | 776 +-
.../include/SimTKcommon/internal/System.h | 1 +
SimTKcommon/Simulation/src/Event.cpp | 7 +-
SimTKcommon/Simulation/src/EventHandler.cpp | 7 +-
SimTKcommon/Simulation/src/EventReporter.cpp | 7 +-
SimTKcommon/Simulation/src/State.cpp | 3489 +---
SimTKcommon/Simulation/src/Subsystem.cpp | 425 +-
SimTKcommon/Simulation/src/SubsystemGutsRep.h | 153 -
SimTKcommon/Simulation/src/SystemGutsRep.h | 2 -
.../SmallMatrix/include/SimTKcommon/internal/Mat.h | 8 +-
.../SmallMatrix/include/SimTKcommon/internal/Row.h | 10 +-
.../include/SimTKcommon/internal/SymMat.h | 2 +-
.../SmallMatrix/include/SimTKcommon/internal/Vec.h | 16 +-
SimTKcommon/include/SimTKcommon/Testing.h | 48 +-
SimTKcommon/include/SimTKcommon/internal/Array.h | 172 +-
.../include/SimTKcommon/internal/ClonePtr.h | 32 +-
.../include/SimTKcommon/internal/Exception.h | 44 +-
.../include/SimTKcommon/internal/ExceptionMacros.h | 2 +-
.../include/SimTKcommon/internal/Pathname.h | 2 +-
.../include/SimTKcommon/internal/ReferencePtr.h | 22 +-
.../include/SimTKcommon/internal/StableArray.h | 2 +-
SimTKcommon/include/SimTKcommon/internal/String.h | 16 +-
SimTKcommon/include/SimTKcommon/internal/Value.h | 12 +-
.../include/SimTKcommon/internal/VectorMath.h | 4 +-
SimTKcommon/include/SimTKcommon/internal/common.h | 109 +-
SimTKcommon/sharedTarget/CMakeLists.txt | 64 +-
SimTKcommon/src/About.cpp | 2 +-
.../src/ElementFilter.cpp => src/NiceTypeName.cpp} | 31 +-
SimTKcommon/src/Parallel2DExecutor.cpp | 5 +-
SimTKcommon/src/ParallelExecutor.cpp | 2 +-
SimTKcommon/src/Pathname.cpp | 12 +-
SimTKcommon/src/Plugin.cpp | 2 +-
SimTKcommon/src/String.cpp | 30 +-
SimTKcommon/src/Timing.cpp | 83 +-
SimTKcommon/src/Xml.cpp | 4 +-
SimTKcommon/src/gmx_atomic.h | 118 +-
SimTKcommon/src/tinyxml.cpp | 2230 +--
SimTKcommon/src/tinyxml.h | 2180 +--
SimTKcommon/src/tinyxmlparser.cpp | 2824 ++--
SimTKcommon/staticTarget/CMakeLists.txt | 42 +-
SimTKcommon/tests/CMakeLists.txt | 14 +-
SimTKcommon/tests/MatVecTest.cpp | 16 +-
SimTKcommon/tests/OrientationTest.cpp | 8 +-
SimTKcommon/tests/RandomTest.cpp | 10 +-
SimTKcommon/tests/RotationTest.cpp | 114 +-
SimTKcommon/tests/SFMTTest.cpp | 42 +-
SimTKcommon/tests/StateTest.cpp | 2 +-
SimTKcommon/tests/TestArray.cpp | 9 +-
SimTKcommon/tests/adhoc/BigMatrixTest.cpp | 164 +-
SimTKcommon/tests/adhoc/CMakeLists.txt | 14 +-
SimTKmath/CMakeLists.txt | 40 +-
.../Geometry/include/simmath/internal/Contact.h | 63 +-
.../include/simmath/internal/ContactGeometry.h | 67 +-
.../include/simmath/internal/ContactTracker.h | 280 +-
SimTKmath/Geometry/include/simmath/internal/Geo.h | 4 +-
.../Geometry/include/simmath/internal/Geo_Box.h | 229 +-
SimTKmath/Geometry/src/Contact.cpp | 25 +
SimTKmath/Geometry/src/ContactGeometry.cpp | 92 +-
SimTKmath/Geometry/src/ContactGeometryImpl.h | 303 +-
SimTKmath/Geometry/src/ContactGeometry_Brick.cpp | 126 +
.../Geometry/src/ContactGeometry_Cylinder.cpp | 174 +-
.../Geometry/src/ContactGeometry_HalfSpace.cpp | 5 +
SimTKmath/Geometry/src/ContactGeometry_Sphere.cpp | 136 +-
SimTKmath/Geometry/src/ContactGeometry_Torus.cpp | 6 +-
.../Geometry/src/ContactGeometry_TriangleMesh.cpp | 6 +-
SimTKmath/Geometry/src/ContactImpl.h | 26 +
SimTKmath/Geometry/src/ContactTracker.cpp | 324 +-
SimTKmath/Geometry/src/Geo_Box.cpp | 5 +-
SimTKmath/Geometry/src/gcvspl.cpp | 978 +-
.../include/simmath/SemiExplicitEulerIntegrator.h | 3 +-
.../Integrators/src/AbstractIntegratorRep.cpp | 8 +-
.../src/CPodes/sundials/include/cpodes/cpodes.h | 52 +-
.../CPodes/sundials/include/cpodes/cpodes_bbdpre.h | 18 +-
.../CPodes/sundials/include/cpodes/cpodes_direct.h | 32 +-
.../CPodes/sundials/include/cpodes/cpodes_spils.h | 32 +-
.../sundials/include/nvector/nvector_parallel.h | 14 +-
.../sundials/include/sundials/sundials_band.h | 2 +-
.../sundials/include/sundials/sundials_dense.h | 4 +-
.../sundials/include/sundials/sundials_iterative.h | 4 +-
.../sundials/include/sundials/sundials_lapack.h | 30 +-
.../sundials/include/sundials/sundials_spbcgs.h | 8 +-
.../sundials/include/sundials/sundials_spgmr.h | 8 +-
.../sundials/include/sundials/sundials_sptfqmr.h | 8 +-
.../sundials/src/cpodes/cpodes_direct_impl.h | 32 +-
.../src/CPodes/sundials/src/cpodes/cpodes_impl.h | 16 +-
.../CPodes/sundials/src/cpodes/cpodes_private.h | 4 +-
.../CPodes/sundials/src/cpodes/cpodes_sptfqmr.c | 4 +-
.../CPodes/sundials/src/nvec_ser/nvector_serial.c | 2 +-
.../CPodes/sundials/src/sundials/sundials_band.c | 18 +-
.../CPodes/sundials/src/sundials/sundials_dense.c | 4 +-
.../sundials/src/sundials/sundials_iterative.c | 30 +-
.../sundials/src/sundials/sundials_sptfqmr.c | 102 +-
.../src/CPodes/sundials/tests/CMakeLists.txt | 14 +-
.../src/CPodes/sundials/tests/cpsAdvDiff_bnd.c | 4 +-
.../src/CPodes/sundials/tests/cpsAdvDiff_bndL.c | 4 +-
.../src/CPodes/sundials/tests/cpsNewtCrd_dns.c | 6 +-
.../src/CPodes/sundials/tests/cpsPend_dnsL.c | 6 +-
.../src/CPodes/sundials/tests/cpsRoberts_dns.c | 4 +-
.../src/CPodes/sundials/tests/cpsRoberts_dnsL.c | 4 +-
.../src/CPodes/sundials/tests/cpsbanx.c | 4 +-
.../src/CPodes/sundials/tests/cpsbanx_lap.c | 4 +-
.../src/CPodes/sundials/tests/cpsdenx.c | 4 +-
.../src/CPodes/sundials/tests/cpsdenx_lap.c | 4 +-
.../src/CPodes/sundials/tests/initroot1.c | 6 +-
.../Integrators/src/CPodes/sundials/tests/newton.c | 6 +-
.../Integrators/src/CPodes/sundials/tests/pend.c | 6 +-
.../Integrators/src/CPodes/sundials/tests/pendEs.c | 6 +-
.../Integrators/src/CPodes/sundials/tests/pendLr.c | 6 +-
.../Integrators/src/CPodes/tests/CMakeLists.txt | 14 +-
.../Integrators/src/CPodes/tests/PendLrCpp.cpp | 6 +-
SimTKmath/Integrators/src/IntegratorRep.h | 8 +-
.../src/RungeKuttaFeldbergIntegrator.cpp | 66 +-
SimTKmath/LinearAlgebra/src/Factor.cpp | 2 +-
SimTKmath/LinearAlgebra/src/FactorQTZ.cpp | 2 +-
SimTKmath/LinearAlgebra/src/FactorQTZRep.h | 4 +-
SimTKmath/LinearAlgebra/src/FactorSVDRep.h | 2 +-
SimTKmath/LinearAlgebra/src/LapackInterface.cpp | 2 +-
SimTKmath/Optimizers/CMakeLists.txt | 3 +-
SimTKmath/Optimizers/src/CFSQPOptimizer.cpp | 328 +-
SimTKmath/Optimizers/src/CFSQPOptimizer.h | 124 +-
SimTKmath/Optimizers/src/CMAESOptimizer.cpp | 326 +
.../{InteriorPointOptimizer.h => CMAESOptimizer.h} | 74 +-
.../Optimizers/src/InteriorPointOptimizer.cpp | 2 +-
.../src/IpOpt/IpDefaultIterateInitializer.cpp | 8 +-
SimTKmath/Optimizers/src/IpOpt/IpException.hpp | 4 +-
SimTKmath/Optimizers/src/IpOpt/IpMatrix.hpp | 8 +-
SimTKmath/Optimizers/src/IpOpt/IpRegOptions.cpp | 2 +-
.../Optimizers/src/IpOpt/IpRestoMinC_1Nrm.cpp | 2 +-
SimTKmath/Optimizers/src/IpOpt/IpStdCInterface.h | 2 +-
SimTKmath/Optimizers/src/IpOpt/IpVector.hpp | 8 +-
SimTKmath/Optimizers/src/IpOpt/IpoptConfig.h | 8 +-
SimTKmath/Optimizers/src/LBFGSBOptimizer.cpp | 2 +-
SimTKmath/Optimizers/src/LBFGSBOptimizer.h | 7 +-
SimTKmath/Optimizers/src/LBFGSOptimizer.cpp | 2 +-
SimTKmath/Optimizers/src/LBFGSOptimizer.h | 6 +-
SimTKmath/Optimizers/src/Optimizer.cpp | 12 +
.../src/{IpOpt => c-cmaes}/CMakeLists.txt | 8 +-
SimTKmath/Optimizers/src/c-cmaes/LICENSE | 32 +
SimTKmath/Optimizers/src/c-cmaes/README.md | 128 +
SimTKmath/Optimizers/src/c-cmaes/cmaes.c | 3132 ++++
SimTKmath/Optimizers/src/c-cmaes/cmaes.h | 176 +
SimTKmath/Optimizers/src/c-cmaes/cmaes_interface.h | 68 +
SimTKmath/Optimizers/src/c-cmaes/doc.txt | 59 +
SimTKmath/Optimizers/src/c-cmaes/docfunctions.txt | 400 +
.../src/c-cmaes/simmath_license_note.txt | 1 +
SimTKmath/Optimizers/src/lbfgs.cpp | 6 +-
SimTKmath/examples/CMakeLists.txt | 63 -
SimTKmath/examples/README.txt | 15 -
SimTKmath/examples/makefile | 40 -
SimTKmath/include/simmath/MultibodyGraphMaker.h | 32 +-
SimTKmath/include/simmath/Optimizer.h | 160 +-
SimTKmath/include/simmath/internal/OptimizerRep.h | 4 +-
SimTKmath/sharedTarget/CMakeLists.txt | 28 +-
SimTKmath/src/Differentiator.cpp | 2 +-
SimTKmath/src/MultibodyGraphMaker.cpp | 52 +-
SimTKmath/staticTarget/CMakeLists.txt | 28 +-
SimTKmath/tests/CMAESTest.cpp | 552 +
SimTKmath/tests/CMakeLists.txt | 14 +-
SimTKmath/tests/IntegratorTest.cpp | 6 +-
SimTKmath/tests/LBFGSBTest.cpp | 4 +-
SimTKmath/tests/OptimizerSystems.h | 191 +
SimTKmath/tests/TestContactGeometry.cpp | 18 +-
SimTKmath/tests/adhoc/CMakeLists.txt | 14 +-
SimTKmath/tests/adhoc/nlpqlp.cpp | 13996 ++++++++--------
SimTKmath/tests/adhoc/nlpqlp.h | 672 +-
Simbody/CMakeLists.txt | 42 +-
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.../simbody-visualizer/simbody-visualizer.cpp | 35 +-
Simbody/Visualizer/src/Visualizer.cpp | 5 +-
Simbody/Visualizer/src/VisualizerGeometry.cpp | 2 +-
Simbody/Visualizer/src/VisualizerProtocol.cpp | 131 +-
Simbody/Visualizer/src/VisualizerProtocol.h | 9 +-
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Simbody/doc/SimbodyAdvancedProgrammingGuide.docx | Bin 657674 -> 626847 bytes
Simbody/doc/SimbodyAdvancedProgrammingGuide.pdf | Bin 759048 -> 770142 bytes
Simbody/doc/SimbodyAndMolmodelUserGuide.docx | Bin 896783 -> 838761 bytes
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Simbody/doc/SimbodyTheoryManual.docx | Bin 7164580 -> 6761005 bytes
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Simbody/examples/CMakeLists.txt | 107 -
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Simbody/examples/Makefile | 63 -
Simbody/examples/README.txt | 63 -
Simbody/examples/README_Makefile.txt | 48 -
Simbody/examples/README_VisualStudio.txt | 137 -
Simbody/include/SimTKsimbody.h | 15 +-
Simbody/include/simbody/internal/Assembler.h | 753 +-
.../include/simbody/internal/AssemblyCondition.h | 222 +
.../simbody/internal/AssemblyCondition_Markers.h | 514 +
.../AssemblyCondition_OrientationSensors.h | 523 +
.../simbody/internal/AssemblyCondition_QValue.h | 122 +
.../simbody/internal/CompliantContactSubsystem.h | 83 +-
.../simbody/internal/ConditionalConstraint.h | 935 ++
Simbody/include/simbody/internal/Constraint.h | 633 +-
Simbody/include/simbody/internal/Constraint_Ball.h | 180 +
.../{ForceSubsystem.h => Constraint_BuiltIns.h} | 40 +-
.../internal/Constraint_LineOnLineContact.h | 456 +
.../simbody/internal/Constraint_PointInPlane.h | 104 +
.../internal/Constraint_PointOnPlaneContact.h | 251 +
Simbody/include/simbody/internal/Constraint_Rod.h | 300 +
.../internal/Constraint_SphereOnPlaneContact.h | 338 +
.../internal/Constraint_SphereOnSphereContact.h | 395 +
Simbody/include/simbody/internal/Constraint_Weld.h | 145 +
.../simbody/internal/ContactTrackerSubsystem.h | 2 +-
.../simbody/internal/Force_MobilityDiscreteForce.h | 2 +-
Simbody/include/simbody/internal/ImpulseSolver.h | 368 +
.../include/simbody/internal/PGSImpulseSolver.h | 103 +
.../include/simbody/internal/PLUSImpulseSolver.h | 158 +
.../internal/SemiExplicitEulerTimeStepper.h | 460 +
.../simbody/internal/SimbodyMatterSubsystem.h | 27 +-
Simbody/include/simbody/internal/common.h | 7 +
Simbody/sharedTarget/CMakeLists.txt | 38 +-
Simbody/src/Assembler.cpp | 259 +-
Simbody/src/AssemblyCondition_Markers.cpp | 176 +
.../src/AssemblyCondition_OrientationSensors.cpp | 185 +
Simbody/src/CablePath_Impl.h | 2 +-
Simbody/src/CableTrackerSubsystem_Impl.h | 4 +-
Simbody/src/CompliantContactSubsystem.cpp | 375 +-
Simbody/src/ConditionalConstraint.cpp | 577 +
Simbody/src/Constraint.cpp | 311 +-
Simbody/src/ConstraintImpl.h | 477 +-
Simbody/src/Constraint_LineOnLineContact.cpp | 580 +
Simbody/src/Constraint_LineOnLineContactImpl.h | 653 +
Simbody/src/Constraint_PointOnPlaneContact.cpp | 199 +
Simbody/src/Constraint_PointOnPlaneContactImpl.h | 335 +
Simbody/src/Constraint_Rod.cpp | 425 +
Simbody/src/Constraint_RodImpl.h | 340 +
Simbody/src/Constraint_SphereOnPlaneContact.cpp | 365 +
Simbody/src/Constraint_SphereOnPlaneContactImpl.h | 503 +
Simbody/src/Constraint_SphereOnSphereContact.cpp | 518 +
Simbody/src/Constraint_SphereOnSphereContactImpl.h | 499 +
Simbody/src/ContactTrackerSubsystem.cpp | 3 +-
Simbody/src/Force.cpp | 20 +
Simbody/src/ForceImpl.h | 21 +-
Simbody/src/ImpulseSolver.cpp | 79 +
Simbody/src/PGSImpulseSolver.cpp | 632 +
Simbody/src/PLUSImpulseSolver.cpp | 1308 ++
Simbody/src/SemiExplicitEulerTimeStepper.cpp | 1303 ++
Simbody/src/SimbodyMatterSubsystem.cpp | 44 +-
Simbody/src/SimbodyMatterSubsystemRep.cpp | 276 +-
Simbody/src/SimbodyMatterSubsystemRep.h | 95 +-
Simbody/src/SimbodyTreeState.h | 54 +-
Simbody/staticTarget/CMakeLists.txt | 34 +-
Simbody/tests/CMakeLists.txt | 14 +-
...zeboReactionForceWithAppliedForceCompliant.cpp} | 26 +-
...> GazeboReactionForceWithAppliedForceRigid.cpp} | 83 +-
Simbody/tests/TestFunctionBasedMobilizedBodies.cpp | 6 +-
Simbody/tests/TestMobilizerReactionForces.cpp | 45 +-
Simbody/tests/TestObservedPointFitter.cpp | 6 +-
.../tests/adhoc/BilateralContactConstraints.cpp | 297 +
Simbody/tests/adhoc/CMakeLists.txt | 28 +-
Simbody/tests/adhoc/CompliantBlockImpact.cpp | 506 +
Simbody/tests/adhoc/ContactBigMeshes.cpp | 6 +-
.../adhoc/ContactBrickTest.cpp} | 278 +-
Simbody/tests/adhoc/LookAtPolygonalMesh.cpp | 141 +
Simbody/tests/adhoc/OpenSimPartyDemoCable.cpp | 126 +-
.../tests/adhoc/RattleBack_ReverseEllipsoid.cpp | 50 +-
Simbody/tests/adhoc/RigidContact1.cpp | 1349 ++
Simbody/tests/adhoc/TestPLUS_SingleBrick.cpp | 1316 +-
Simbody/tests/adhoc/TimsBoxPGS.cpp | 2081 ++-
SimbodyAPI.html | 2 +-
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appveyor.yml | 46 +
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cmake/SimbodyConfigVersion.cmake.in | 55 -
debian/changelog | 9 +
debian/control | 8 +-
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examples/BricardMechanism/CMakeLists.txt | 67 +
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examples/BricardMechanism/InstalledCMakeLists.txt | 20 +
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examples/CMakeLists.txt | 193 +
{Simbody/examples => examples}/ChainExample.cpp | 0
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{Simbody/examples => examples}/ExampleGears.cpp | 0
{Simbody/examples => examples}/ExampleGeodesic.cpp | 16 +-
examples/ExampleIMUTracking.cpp | 197 +
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.../examples => examples}/ExampleTwoBoxCollide.cpp | 80 +-
{Simbody/examples => examples}/ExampleWrapping.cpp | 0
examples/Gazebo2Simbody/CMakeLists.txt | 67 +
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examples/Gazebo2Simbody/InstalledCMakeLists.txt | 20 +
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examples/InstalledCMakeLists.txt | 106 +
{Simbody/examples => examples}/JaredsDude.cpp | 0
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{Simbody/examples => examples}/PendulumNoViz.cpp | 0
examples/README.txt | 53 +
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examples/TaskSpaceControl-Atlas/Atlas.cpp | 611 +
examples/TaskSpaceControl-Atlas/Atlas.h | 156 +
examples/TaskSpaceControl-Atlas/CMakeLists.txt | 69 +
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examples/TaskSpaceControl-Atlas/URDFReader.cpp | 206 +
examples/TaskSpaceControl-Atlas/URDFReader.h | 275 +
examples/TaskSpaceControl-Atlas/geometry/head.stl | Bin 0 -> 55034 bytes
.../geometry/head_camera.stl | Bin 0 -> 12884 bytes
.../TaskSpaceControl-Atlas/geometry/l_clav.stl | Bin 0 -> 12584 bytes
.../TaskSpaceControl-Atlas/geometry/l_farm.stl | Bin 0 -> 11184 bytes
.../TaskSpaceControl-Atlas/geometry/l_foot.stl | Bin 0 -> 12484 bytes
.../TaskSpaceControl-Atlas/geometry/l_hand.stl | Bin 0 -> 8484 bytes
.../TaskSpaceControl-Atlas/geometry/l_larm.stl | Bin 0 -> 14084 bytes
.../TaskSpaceControl-Atlas/geometry/l_lglut.stl | Bin 0 -> 8284 bytes
.../TaskSpaceControl-Atlas/geometry/l_lleg.stl | Bin 0 -> 71984 bytes
.../TaskSpaceControl-Atlas/geometry/l_scap.stl | Bin 0 -> 15584 bytes
.../TaskSpaceControl-Atlas/geometry/l_talus.stl | Bin 0 -> 2284 bytes
.../TaskSpaceControl-Atlas/geometry/l_uarm.stl | Bin 0 -> 11184 bytes
.../TaskSpaceControl-Atlas/geometry/l_uglut.stl | Bin 0 -> 2484 bytes
.../TaskSpaceControl-Atlas/geometry/l_uleg.stl | Bin 0 -> 97584 bytes
.../TaskSpaceControl-Atlas/geometry/ltorso.stl | Bin 0 -> 4884 bytes
.../TaskSpaceControl-Atlas/geometry/mtorso.stl | Bin 0 -> 1084 bytes
.../TaskSpaceControl-Atlas/geometry/pelvis.stl | Bin 0 -> 93534 bytes
.../TaskSpaceControl-Atlas/geometry/r_clav.stl | Bin 0 -> 12584 bytes
.../TaskSpaceControl-Atlas/geometry/r_farm.stl | Bin 0 -> 11184 bytes
.../TaskSpaceControl-Atlas/geometry/r_foot.stl | Bin 0 -> 12484 bytes
.../TaskSpaceControl-Atlas/geometry/r_hand.stl | Bin 0 -> 8484 bytes
.../TaskSpaceControl-Atlas/geometry/r_larm.stl | Bin 0 -> 14084 bytes
.../TaskSpaceControl-Atlas/geometry/r_lglut.stl | Bin 0 -> 8284 bytes
.../TaskSpaceControl-Atlas/geometry/r_lleg.stl | Bin 0 -> 71984 bytes
.../TaskSpaceControl-Atlas/geometry/r_scap.stl | Bin 0 -> 15584 bytes
.../TaskSpaceControl-Atlas/geometry/r_talus.stl | Bin 0 -> 2284 bytes
.../TaskSpaceControl-Atlas/geometry/r_uarm.stl | Bin 0 -> 11184 bytes
.../TaskSpaceControl-Atlas/geometry/r_uglut.stl | Bin 0 -> 2484 bytes
.../TaskSpaceControl-Atlas/geometry/r_uleg.stl | Bin 0 -> 97584 bytes
.../TaskSpaceControl-Atlas/geometry/utorso.stl | Bin 0 -> 275284 bytes
.../geometry/utorso_pack.stl | Bin 0 -> 94484 bytes
.../TaskSpaceControl-Atlas/models/atlas_v4.urdf | 2144 +++
.../models/atlas_v4_free_pelvis.urdf | 2151 +++
.../models/atlas_v4_grounded.urdf | 2151 +++
.../models/atlas_v4_locked_pelvis.urdf | 2151 +++
.../models/atlas_v4_robotiq_hands.urdf | 3168 ++++
.../models/atlas_v4_upper.urdf | 1619 ++
examples/TaskSpaceControl-UR10/CMakeLists.txt | 69 +
.../TaskSpaceControl-UR10/InstalledCMakeLists.txt | 22 +
.../TaskSpaceControl-UR10.cpp | 554 +
examples/TaskSpaceControl-UR10/UR10.cpp | 214 +
examples/TaskSpaceControl-UR10/UR10.h | 169 +
examples/TaskSpaceControl-UR10/geometry/Base.obj | 1118 ++
.../TaskSpaceControl-UR10/geometry/Forearm.obj | 7328 ++++++++
.../TaskSpaceControl-UR10/geometry/Shoulder.obj | 6140 +++++++
.../TaskSpaceControl-UR10/geometry/UpperArm.obj | 5894 +++++++
examples/TaskSpaceControl-UR10/geometry/Wrist1.obj | 6314 +++++++
examples/TaskSpaceControl-UR10/geometry/Wrist2.obj | 16646 +++++++++++++++++++
examples/TaskSpaceControl-UR10/geometry/Wrist3.obj | 1478 ++
examples/TaskSpaceControl-UR10/models/README.txt | 3 +
examples/TaskSpaceControl-UR10/models/model.pdf | Bin 0 -> 29059 bytes
.../models/ur10_joint_limited_robot.urdf | 258 +
.../TaskSpaceControl-UR10/models/ur10_robot.urdf | 258 +
.../TheoJansenStrandbeest.cpp | 0
.../UnconstrainedNumericalDiffOptimization.cpp | 0
.../UnconstrainedOptimization.cpp | 0
{SimTKmath/examples => examples}/UserGuide.cpp | 0
.../examples => examples}/UserGuideLimits.cpp | 0
examples/shared/README.txt | 7 +
examples/shared/SimbodyExampleHelper.h | 132 +
examples/shared/TaskSpace.cpp | 432 +
examples/shared/TaskSpace.h | 519 +
459 files changed, 111553 insertions(+), 25084 deletions(-)
delete mode 100644 .travis.yml
create mode 100644 CHANGELOG.md
create mode 100644 CONTRIBUTING.md
delete mode 100644 ChangeLog.txt
rename LICENSE => LICENSE.txt (100%)
copy SimTKcommon/Simulation/{src/State.cpp => include/SimTKcommon/internal/StateImpl.h} (55%)
delete mode 100644 SimTKcommon/Simulation/src/SubsystemGutsRep.h
copy SimTKcommon/{BigMatrix/src/ElementFilter.cpp => src/NiceTypeName.cpp} (67%)
create mode 100644 SimTKmath/Geometry/src/ContactGeometry_Brick.cpp
create mode 100644 SimTKmath/Optimizers/src/CMAESOptimizer.cpp
copy SimTKmath/Optimizers/src/{InteriorPointOptimizer.h => CMAESOptimizer.h} (51%)
copy SimTKmath/Optimizers/src/{IpOpt => c-cmaes}/CMakeLists.txt (76%)
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/LICENSE
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/README.md
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/cmaes.c
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/cmaes.h
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/cmaes_interface.h
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/doc.txt
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/docfunctions.txt
create mode 100644 SimTKmath/Optimizers/src/c-cmaes/simmath_license_note.txt
delete mode 100644 SimTKmath/examples/CMakeLists.txt
delete mode 100644 SimTKmath/examples/README.txt
delete mode 100644 SimTKmath/examples/makefile
create mode 100644 SimTKmath/tests/CMAESTest.cpp
create mode 100644 SimTKmath/tests/OptimizerSystems.h
delete mode 100644 Simbody/SimbodyThingsToDoListAndTimeline.doc
delete mode 100644 Simbody/ThingsToDoList.doc
delete mode 100644 Simbody/doc/FrictionConstraints.docx
delete mode 100644 Simbody/doc/HowToComputeMuscleMomentArm.docx
delete mode 100644 Simbody/examples/CMakeLists.txt
delete mode 100644 Simbody/examples/InstalledCMakeLists.txt
delete mode 100644 Simbody/examples/Makefile
delete mode 100644 Simbody/examples/README.txt
delete mode 100644 Simbody/examples/README_Makefile.txt
delete mode 100644 Simbody/examples/README_VisualStudio.txt
create mode 100644 Simbody/include/simbody/internal/AssemblyCondition.h
create mode 100644 Simbody/include/simbody/internal/AssemblyCondition_Markers.h
create mode 100644 Simbody/include/simbody/internal/AssemblyCondition_OrientationSensors.h
create mode 100644 Simbody/include/simbody/internal/AssemblyCondition_QValue.h
create mode 100644 Simbody/include/simbody/internal/ConditionalConstraint.h
create mode 100644 Simbody/include/simbody/internal/Constraint_Ball.h
copy Simbody/include/simbody/internal/{ForceSubsystem.h => Constraint_BuiltIns.h} (68%)
create mode 100644 Simbody/include/simbody/internal/Constraint_LineOnLineContact.h
create mode 100644 Simbody/include/simbody/internal/Constraint_PointInPlane.h
create mode 100644 Simbody/include/simbody/internal/Constraint_PointOnPlaneContact.h
create mode 100644 Simbody/include/simbody/internal/Constraint_Rod.h
create mode 100644 Simbody/include/simbody/internal/Constraint_SphereOnPlaneContact.h
create mode 100644 Simbody/include/simbody/internal/Constraint_SphereOnSphereContact.h
create mode 100644 Simbody/include/simbody/internal/Constraint_Weld.h
create mode 100644 Simbody/include/simbody/internal/ImpulseSolver.h
create mode 100644 Simbody/include/simbody/internal/PGSImpulseSolver.h
create mode 100644 Simbody/include/simbody/internal/PLUSImpulseSolver.h
create mode 100644 Simbody/include/simbody/internal/SemiExplicitEulerTimeStepper.h
create mode 100644 Simbody/src/AssemblyCondition_Markers.cpp
create mode 100644 Simbody/src/AssemblyCondition_OrientationSensors.cpp
create mode 100644 Simbody/src/ConditionalConstraint.cpp
create mode 100644 Simbody/src/Constraint_LineOnLineContact.cpp
create mode 100644 Simbody/src/Constraint_LineOnLineContactImpl.h
create mode 100644 Simbody/src/Constraint_PointOnPlaneContact.cpp
create mode 100644 Simbody/src/Constraint_PointOnPlaneContactImpl.h
create mode 100644 Simbody/src/Constraint_Rod.cpp
create mode 100644 Simbody/src/Constraint_RodImpl.h
create mode 100644 Simbody/src/Constraint_SphereOnPlaneContact.cpp
create mode 100644 Simbody/src/Constraint_SphereOnPlaneContactImpl.h
create mode 100644 Simbody/src/Constraint_SphereOnSphereContact.cpp
create mode 100644 Simbody/src/Constraint_SphereOnSphereContactImpl.h
create mode 100644 Simbody/src/ImpulseSolver.cpp
create mode 100644 Simbody/src/PGSImpulseSolver.cpp
create mode 100644 Simbody/src/PLUSImpulseSolver.cpp
create mode 100644 Simbody/src/SemiExplicitEulerTimeStepper.cpp
copy Simbody/tests/{GazeboReactionForceWithAppliedForce.cpp => GazeboReactionForceWithAppliedForceCompliant.cpp} (94%)
rename Simbody/tests/{GazeboReactionForceWithAppliedForce.cpp => GazeboReactionForceWithAppliedForceRigid.cpp} (81%)
create mode 100644 Simbody/tests/adhoc/BilateralContactConstraints.cpp
create mode 100644 Simbody/tests/adhoc/CompliantBlockImpact.cpp
copy Simbody/{examples/Rattleback.cpp => tests/adhoc/ContactBrickTest.cpp} (54%)
create mode 100644 Simbody/tests/adhoc/LookAtPolygonalMesh.cpp
create mode 100644 Simbody/tests/adhoc/RigidContact1.cpp
create mode 100644 appveyor.yml
delete mode 100644 cmake/SimbodyConfigVersion.cmake.in
rename debian/{libsimbody3.4.install => libsimbody3.5.install} (100%)
rename debian/{libsimbody3.4.lintian-overrides => libsimbody3.5.lintian-overrides} (59%)
delete mode 100644 doc/HowToBuildSimbodyFromSource_MacLinux.doc
delete mode 100644 doc/HowToBuildSimbodyFromSource_MacLinux.pdf
delete mode 100644 doc/HowToBuildSimbodyFromSource_Windows.doc
delete mode 100644 doc/HowToBuildSimbodyFromSource_Windows.pdf
delete mode 100644 doc/INSTALL.txt
delete mode 100644 doc/LICENSE.txt
create mode 100644 doc/images/doublePendulum.gif
create mode 100644 examples/BricardMechanism/CMakeLists.txt
rename {Simbody/examples => examples/BricardMechanism}/ExampleBricardMechanism.cpp (54%)
create mode 100644 examples/BricardMechanism/InstalledCMakeLists.txt
rename {Simbody/examples => examples/BricardMechanism/geometry}/Bricard_EVEN_PART.obj (100%)
rename {Simbody/examples => examples/BricardMechanism/geometry}/Bricard_ODD_PART.obj (100%)
create mode 100644 examples/CMakeLists.txt
rename {Simbody/examples => examples}/ChainExample.cpp (100%)
rename {SimTKmath/examples => examples}/ConstrainedNumericalDiffOptimization.cpp (100%)
rename {SimTKmath/examples => examples}/ConstrainedOptimization.cpp (100%)
rename {SimTKmath/examples => examples}/Differentiator.cpp (100%)
rename {Simbody/examples => examples}/ExampleAmysIKProblem.cpp (100%)
rename {Simbody/examples => examples}/ExampleAssemblerPlayground.cpp (100%)
rename {Simbody/examples => examples}/ExampleCablePath.cpp (100%)
rename {Simbody/examples => examples}/ExampleClosedTopologyMechanism.cpp (100%)
rename {Simbody/examples => examples}/ExampleContactPlayground.cpp (100%)
rename {Simbody/examples => examples}/ExampleCustomConstraint.cpp (100%)
rename {Simbody/examples => examples}/ExampleEventHandler.cpp (100%)
rename {Simbody/examples => examples}/ExampleEventReporter.cpp (100%)
rename {Simbody/examples => examples}/ExampleGears.cpp (100%)
rename {Simbody/examples => examples}/ExampleGeodesic.cpp (98%)
create mode 100644 examples/ExampleIMUTracking.cpp
rename {Simbody/examples => examples}/ExampleKneeJoint.cpp (63%)
rename {Simbody/examples => examples}/ExampleLongPendulum.cpp (100%)
rename {Simbody/examples => examples}/ExampleMotor-TorqueLimited-Constraint.cpp (100%)
rename {Simbody/examples => examples}/ExampleMotor-TorqueLimited-Controller.cpp (100%)
rename {Simbody/examples => examples}/ExampleMotor-TorqueLimited-Motion.cpp (100%)
rename {Simbody/examples => examples}/ExampleMotorWithSpeedControl.cpp (100%)
rename {Simbody/examples => examples}/ExamplePendulum.cpp (100%)
rename {Simbody/examples => examples}/ExampleSampleAndHold.cpp (100%)
rename {Simbody/examples => examples}/ExampleScissorLift.cpp (100%)
rename {Simbody/examples => examples}/ExampleSimplePlanarMechanism.cpp (100%)
rename {Simbody/examples => examples}/ExampleTwoBoxCollide.cpp (84%)
rename {Simbody/examples => examples}/ExampleWrapping.cpp (100%)
create mode 100644 examples/Gazebo2Simbody/CMakeLists.txt
rename {Simbody/examples => examples/Gazebo2Simbody}/Gazebo2Simbody.cpp (97%)
create mode 100644 examples/Gazebo2Simbody/InstalledCMakeLists.txt
rename Simbody/examples/Gazebo_double_pendulum.sdf => examples/Gazebo2Simbody/models/double_pendulum.sdf (100%)
rename Simbody/examples/Gazebo_ragdoll.sdf => examples/Gazebo2Simbody/models/ragdoll.sdf (100%)
rename Simbody/examples/Gazebo_revolute_joint_test_merged.sdf => examples/Gazebo2Simbody/models/revolute_joint_test_merged.sdf (100%)
create mode 100644 examples/InstalledCMakeLists.txt
rename {Simbody/examples => examples}/JaredsDude.cpp (100%)
rename {SimTKmath/examples => examples}/ParameterConstrainedOptimization.cpp (100%)
rename {Simbody/examples => examples}/PendulumNoViz.cpp (100%)
create mode 100644 examples/README.txt
rename {Simbody/examples => examples}/Rattleback.cpp (100%)
rename {Simbody/examples => examples}/SimbodyInstallTest.cpp (100%)
rename {Simbody/examples => examples}/SimbodyInstallTestNoViz.cpp (100%)
rename {SimTKmath/examples => examples}/SimpleDifferentiator.cpp (100%)
rename {SimTKmath/examples => examples}/SimpleIntegrator.cpp (100%)
create mode 100644 examples/TaskSpaceControl-Atlas/Atlas.cpp
create mode 100644 examples/TaskSpaceControl-Atlas/Atlas.h
create mode 100644 examples/TaskSpaceControl-Atlas/CMakeLists.txt
create mode 100644 examples/TaskSpaceControl-Atlas/InstalledCMakeLists.txt
create mode 100644 examples/TaskSpaceControl-Atlas/TaskSpaceControl-Atlas.cpp
create mode 100644 examples/TaskSpaceControl-Atlas/URDFReader.cpp
create mode 100644 examples/TaskSpaceControl-Atlas/URDFReader.h
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/head.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/head_camera.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_clav.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_farm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_foot.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_hand.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_larm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_lglut.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_lleg.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_scap.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_talus.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_uarm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_uglut.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/l_uleg.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/ltorso.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/mtorso.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/pelvis.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_clav.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_farm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_foot.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_hand.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_larm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_lglut.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_lleg.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_scap.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_talus.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_uarm.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_uglut.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/r_uleg.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/utorso.stl
create mode 100644 examples/TaskSpaceControl-Atlas/geometry/utorso_pack.stl
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4.urdf
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4_free_pelvis.urdf
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4_grounded.urdf
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4_locked_pelvis.urdf
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4_robotiq_hands.urdf
create mode 100644 examples/TaskSpaceControl-Atlas/models/atlas_v4_upper.urdf
create mode 100644 examples/TaskSpaceControl-UR10/CMakeLists.txt
create mode 100644 examples/TaskSpaceControl-UR10/InstalledCMakeLists.txt
create mode 100644 examples/TaskSpaceControl-UR10/TaskSpaceControl-UR10.cpp
create mode 100644 examples/TaskSpaceControl-UR10/UR10.cpp
create mode 100644 examples/TaskSpaceControl-UR10/UR10.h
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Base.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Forearm.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Shoulder.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/UpperArm.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Wrist1.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Wrist2.obj
create mode 100644 examples/TaskSpaceControl-UR10/geometry/Wrist3.obj
create mode 100644 examples/TaskSpaceControl-UR10/models/README.txt
create mode 100644 examples/TaskSpaceControl-UR10/models/model.pdf
create mode 100644 examples/TaskSpaceControl-UR10/models/ur10_joint_limited_robot.urdf
create mode 100644 examples/TaskSpaceControl-UR10/models/ur10_robot.urdf
rename {Simbody/examples => examples}/TheoJansenStrandbeest.cpp (100%)
rename {SimTKmath/examples => examples}/UnconstrainedNumericalDiffOptimization.cpp (100%)
rename {SimTKmath/examples => examples}/UnconstrainedOptimization.cpp (100%)
rename {SimTKmath/examples => examples}/UserGuide.cpp (100%)
rename {SimTKmath/examples => examples}/UserGuideLimits.cpp (100%)
create mode 100644 examples/shared/README.txt
create mode 100644 examples/shared/SimbodyExampleHelper.h
create mode 100644 examples/shared/TaskSpace.cpp
create mode 100644 examples/shared/TaskSpace.h
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