[pysph] branch master updated (59a152c -> a526b9e)
Anton Gladky
gladk at moszumanska.debian.org
Sun Jun 7 07:32:20 UTC 2015
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository pysph.
from 59a152c Add autopkgtest.
adds ad3599b Imported Upstream version 0~20150606.gitfa26de9
new 436834d Merge tag 'upstream/0_20150606.gitfa26de9'
new 54eddc8 Disable using napoleon sphinx module.
new 1b33dc9 Disable autotest temporary.
new e86a545 Install only pysph_viewer in /usr/bin
new b9c26dc Set HOME in /tmp-created dir. (Closes: #787575)
new 2be6b57 Apply cme fix dpkg-control.
new d496e1d Update changelog.
new 512783a Fix binary-arch build. Thanks to Aaron M. Ucko. (Closes: #787967)
new a526b9e Update changelog.
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
LICENSE.txt | 30 +
MANIFEST.in | 11 +-
README.md | 139 --
README.rst | 166 ++
TODO.md | 6 -
appveyor-run-env.cmd | 6 +
appveyor.yml | 32 +
debian/changelog | 18 +
debian/control | 90 +-
debian/patches/10_remove_sphinx_module.patch | 42 +
debian/patches/series | 1 +
debian/pysph-viewer.install | 2 +-
debian/rules | 8 +-
docs/Images/pysph_viewer.png | Bin 299403 -> 102167 bytes
docs/source/conf.py | 26 +-
docs/source/design/overview.rst | 98 +-
docs/source/design/working_with_particles.rst | 28 +-
docs/source/index.rst | 34 +-
docs/source/installation.rst | 592 +++++-
docs/source/overview.rst | 117 +-
docs/source/reference/equations.rst | 43 +-
docs/source/reference/index.rst | 13 +-
docs/source/reference/particle_array.rst | 12 +
docs/source/reference/tools.rst | 43 +
docs/source/tutorial/circular_patch.rst | 116 ++
docs/source/using_pysph.rst | 83 +-
examples/SPHERIC/moving_square.py | 61 +-
examples/SPHysics/dambreak_sphysics.py | 2 +-
examples/advection_mixing.py | 4 +-
examples/advection_test.py | 4 +-
examples/dam_break.py | 4 +-
examples/dam_break3D.py | 2 +-
examples/db_geometry.py | 43 +-
examples/elliptical_drop.py | 10 +-
examples/gas_dynamics/noh.py | 2 +-
examples/gas_dynamics/sedov.py | 2 +-
examples/gas_dynamics/shocktube.py | 2 +-
examples/gas_dynamics/shocktube1d.py | 2 +-
examples/hydrostatic_tank.py | 4 +-
examples/iisph/dam_break.py | 22 +-
examples/iisph/elliptical_drop.py | 8 +-
examples/performance/cube.py | 112 ++
examples/rigid_body/README.rst | 19 +
examples/rigid_body/dam_break3D_sph.py | 140 ++
examples/rigid_body/rigid_block_in_tank.py | 195 ++
examples/rigid_body/rigid_collision.py | 98 +
examples/rigid_body/simple_rigid_body.py | 73 +
examples/rigid_body/sph.vtk.gz | Bin 0 -> 161862 bytes
examples/solid_mech/rings.py | 6 +-
examples/solid_mech/taylor_bar.py | 2 +-
examples/summation_density.py | 6 +-
examples/surface_tension/circular_droplet.py | 6 +-
examples/surface_tension/khi_sy11.py | 4 +-
examples/surface_tension/khi_tvf.py | 26 +-
examples/surface_tension/square_droplet.py | 13 +-
examples/transport_velocity/cavity.py | 25 +-
examples/transport_velocity/couette.py | 34 +-
examples/transport_velocity/lattice_cylinders.py | 23 +-
examples/transport_velocity/periodic_cylinders.py | 25 +-
examples/transport_velocity/poiseuille.py | 25 +-
examples/transport_velocity/rayleigh_taylor.py | 39 +-
examples/transport_velocity/taylor_green.py | 8 +-
examples/trivial_inlet_outlet.py | 122 ++
pip_requirements.txt | 6 -
pysph/__init__.py | 4 +
pysph/base/ast_utils.py | 8 +-
pysph/base/c_kernels.pyx | 360 +++-
.../base/{c_kernels_pyx.src => c_kernels.pyx.mako} | 37 +-
pysph/base/carray.pxd | 178 --
pysph/base/carray.pyx | 1842 ------------------
pysph/base/carray_pxd.src | 92 -
pysph/base/carray_pyx.src | 534 ------
pysph/base/config.py | 38 +
pysph/base/cython_generator.py | 59 +-
pysph/base/ext_module.py | 81 +-
pysph/base/generator.py | 149 --
pysph/base/kernels.py | 68 +-
pysph/base/nnps.pxd | 144 +-
pysph/base/nnps.pyx | 1850 ++++++++++--------
pysph/base/particle_array.pxd | 4 +-
pysph/base/particle_array.pyx | 409 ++--
pysph/base/point.pxd | 8 +-
pysph/base/point.pyx | 4 +-
pysph/base/reduce_array.py | 67 +
pysph/base/tests/benchmark_nnps.py | 177 --
pysph/base/tests/particle_array_tests.py | 51 +-
pysph/base/tests/test_carray.py | 116 +-
pysph/base/tests/test_config.py | 59 +
pysph/base/tests/test_cython_generator.py | 99 +-
pysph/base/tests/test_domain_manager.py | 232 +++
pysph/base/tests/test_ext_module.py | 57 +-
pysph/base/tests/test_neighbor_cache.py | 94 +
pysph/base/tests/test_nnps.py | 237 ++-
pysph/base/tests/test_reduce_array.py | 44 +
pysph/base/utils.py | 231 ++-
pysph/parallel/parallel_manager.pyx | 55 +-
pysph/parallel/parallel_utils.py | 2 +-
pysph/parallel/test/test_parallel.py | 27 -
pysph/parallel/test/test_parallel_run.py | 155 --
pysph/parallel/{test => tests}/IPART.txt.gz | Bin
pysph/{base => parallel/tests}/__init__.py | 0
.../parallel/tests}/cavity.py | 24 +-
pysph/parallel/tests/check_dump_load.py | 44 +
pysph/parallel/{test => tests}/dambreak3D.py | 7 +-
.../parallel/tests}/elliptical_drop.py | 70 +-
pysph/parallel/tests/example_test_case.py | 152 ++
pysph/parallel/{test => tests}/lb_exchange.py | 0
pysph/parallel/tests/reduce_array.py | 24 +
pysph/parallel/{test => tests}/remote_exchange.py | 0
pysph/parallel/tests/simple_reduction.py | 63 +
.../parallel/{test => tests}/summation_density.py | 22 +-
pysph/parallel/tests/test_openmp.py | 64 +
pysph/parallel/tests/test_parallel.py | 66 +
pysph/parallel/tests/test_parallel_run.py | 49 +
pysph/solver/application.py | 191 +-
pysph/solver/controller.py | 12 +-
pysph/solver/solver.py | 373 ++--
pysph/solver/solver_interfaces.py | 30 +-
pysph/{base => solver/tests}/__init__.py | 0
pysph/solver/tests/test_solver_utils.py | 110 ++
pysph/solver/utils.py | 210 ++-
pysph/sph/acceleration_eval.py | 22 +-
pysph/sph/acceleration_eval_cython.mako | 163 +-
pysph/sph/acceleration_eval_cython_helper.py | 128 +-
pysph/sph/basic_equations.py | 150 +-
pysph/sph/boundary_equations.py | 5 +
pysph/sph/equation.py | 119 +-
pysph/sph/iisph.py | 61 +-
pysph/sph/integrator.py | 59 +-
pysph/sph/integrator_cython.mako | 1 +
pysph/sph/integrator_cython_helper.py | 41 +-
pysph/sph/integrator_step.py | 239 ++-
pysph/sph/misc/advection.py | 5 +-
pysph/sph/rigid_body.py | 357 ++++
pysph/sph/simple_inlet_outlet.py | 195 ++
pysph/sph/solid_mech/basic.py | 143 +-
pysph/sph/solid_mech/hvi.py | 5 +-
pysph/sph/sph_compiler.py | 9 +-
pysph/sph/tests/test_acceleration_eval.py | 71 +-
.../tests/test_acceleration_eval_cython_helper.py | 50 +
pysph/sph/tests/test_equations.py | 31 +-
pysph/sph/tests/test_integrator.py | 200 ++
pysph/sph/tests/test_simple_inlet_outlet.py | 219 +++
pysph/sph/wc/basic.py | 285 ++-
pysph/sph/wc/transport_velocity.py | 335 ++--
pysph/tools/gmsh.py | 459 +++++
pysph/tools/interpolator.py | 99 +-
pysph/tools/mayavi_viewer.py | 52 +-
pysph/tools/ndspmhd.py | 3 +-
pysph/tools/pprocess.py | 2 +-
pysph/tools/pysph_to_vtk.py | 37 +-
pysph/tools/run_parallel_script.py | 70 +-
pysph/tools/sphysics.py | 2 +-
pysph/tools/tests/test_interpolator.py | 6 +-
pysph/tools/uniform_distribution.py | 25 +-
pyzoltan/core/carray.pxd | 167 +-
pyzoltan/core/carray.pxd.mako | 92 +
pyzoltan/core/carray.pyx | 1986 ++++++++++++++------
pyzoltan/core/carray.pyx.mako | 750 ++++++++
pyzoltan/core/carray_pxd.src | 92 -
pyzoltan/core/carray_pyx.src | 534 ------
pyzoltan/core/generator.py | 167 +-
pyzoltan/core/msstdint.h | 259 +++
pyzoltan/core/tests/3d_partition.py | 78 +-
pyzoltan/core/tests/geometric_partitioner.py | 20 +-
pyzoltan/core/tests/test_zoltan.py | 26 +-
pyzoltan/core/tests/zcomm.py | 12 +-
pyzoltan/core/zoltan.pyx | 46 +-
requirements-2.6.txt | 8 +
requirements.txt | 5 +
setup.cfg | 4 +
setup.py | 592 ++++--
shippable.yml | 4 +-
windows_env.bat | 3 +
174 files changed, 12841 insertions(+), 7670 deletions(-)
create mode 100644 LICENSE.txt
delete mode 100644 README.md
create mode 100644 README.rst
delete mode 100644 TODO.md
create mode 100644 appveyor-run-env.cmd
create mode 100644 appveyor.yml
create mode 100644 debian/patches/10_remove_sphinx_module.patch
create mode 100644 debian/patches/series
create mode 100644 docs/source/reference/tools.rst
create mode 100644 examples/performance/cube.py
create mode 100644 examples/rigid_body/README.rst
create mode 100644 examples/rigid_body/dam_break3D_sph.py
create mode 100644 examples/rigid_body/rigid_block_in_tank.py
create mode 100644 examples/rigid_body/rigid_collision.py
create mode 100644 examples/rigid_body/simple_rigid_body.py
create mode 100644 examples/rigid_body/sph.vtk.gz
create mode 100644 examples/trivial_inlet_outlet.py
delete mode 100644 pip_requirements.txt
rename pysph/base/{c_kernels_pyx.src => c_kernels.pyx.mako} (69%)
delete mode 100644 pysph/base/carray.pxd
delete mode 100644 pysph/base/carray.pyx
delete mode 100644 pysph/base/carray_pxd.src
delete mode 100644 pysph/base/carray_pyx.src
create mode 100644 pysph/base/config.py
delete mode 100755 pysph/base/generator.py
create mode 100644 pysph/base/reduce_array.py
delete mode 100644 pysph/base/tests/benchmark_nnps.py
create mode 100644 pysph/base/tests/test_config.py
create mode 100644 pysph/base/tests/test_domain_manager.py
create mode 100644 pysph/base/tests/test_neighbor_cache.py
create mode 100644 pysph/base/tests/test_reduce_array.py
delete mode 100644 pysph/parallel/test/test_parallel.py
delete mode 100644 pysph/parallel/test/test_parallel_run.py
rename pysph/parallel/{test => tests}/IPART.txt.gz (100%)
copy pysph/{base => parallel/tests}/__init__.py (100%)
copy {examples/transport_velocity => pysph/parallel/tests}/cavity.py (89%)
create mode 100644 pysph/parallel/tests/check_dump_load.py
rename pysph/parallel/{test => tests}/dambreak3D.py (94%)
copy {examples => pysph/parallel/tests}/elliptical_drop.py (67%)
create mode 100644 pysph/parallel/tests/example_test_case.py
rename pysph/parallel/{test => tests}/lb_exchange.py (100%)
create mode 100644 pysph/parallel/tests/reduce_array.py
rename pysph/parallel/{test => tests}/remote_exchange.py (100%)
create mode 100644 pysph/parallel/tests/simple_reduction.py
rename pysph/parallel/{test => tests}/summation_density.py (90%)
create mode 100644 pysph/parallel/tests/test_openmp.py
create mode 100644 pysph/parallel/tests/test_parallel.py
create mode 100644 pysph/parallel/tests/test_parallel_run.py
copy pysph/{base => solver/tests}/__init__.py (100%)
create mode 100644 pysph/solver/tests/test_solver_utils.py
create mode 100644 pysph/sph/rigid_body.py
create mode 100644 pysph/sph/simple_inlet_outlet.py
create mode 100644 pysph/sph/tests/test_acceleration_eval_cython_helper.py
create mode 100644 pysph/sph/tests/test_integrator.py
create mode 100644 pysph/sph/tests/test_simple_inlet_outlet.py
create mode 100644 pysph/tools/gmsh.py
create mode 100644 pyzoltan/core/carray.pxd.mako
create mode 100644 pyzoltan/core/carray.pyx.mako
delete mode 100644 pyzoltan/core/carray_pxd.src
delete mode 100644 pyzoltan/core/carray_pyx.src
create mode 100644 pyzoltan/core/msstdint.h
create mode 100644 requirements-2.6.txt
create mode 100644 requirements.txt
create mode 100644 setup.cfg
create mode 100644 windows_env.bat
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