[r-cran-mcmcpack] 33/90: Imported Debian patch 0.9-6-1
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:37 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit db00b784c52c5d266671573cc365a0f97f0fddb2
Merge: f2b74a8 1fa77cd
Author: Chris Lawrence <lawrencc at debian.org>
Date: Mon Mar 16 22:18:40 2009 -0500
Imported Debian patch 0.9-6-1
DESCRIPTION | 8 +-
HISTORY | 15 ++
LICENSE | 14 +-
NAMESPACE | 3 +-
R/BayesFactors.R | 13 ++
R/MCMCSVDreg.R | 11 +-
R/MCMCdynamicEI.R | 19 ++-
R/MCMCfactanal.R | 9 +-
R/MCMChierEI.R | 19 ++-
R/MCMCirt1d.R | 10 ++
R/MCMCirtHier1d.R | 270 ++++++++++++++++++++++++++++++++
R/MCMCirtKd.R | 7 +
R/MCMCirtKdRob.R | 7 +
R/MCMClogit.R | 14 +-
R/MCMCmetrop1R.R | 10 ++
R/MCMCmixfactanal.R | 7 +
R/MCMCmnl.R | 12 +-
R/MCMCoprobit.R | 10 ++
R/MCMCordfactanal.R | 7 +
R/MCMCpoisson.R | 23 ++-
R/MCMCpoissonChangepoint.R | 10 ++
R/MCMCprobit.R | 14 +-
R/MCMCregress.R | 14 +-
R/MCMCtobit.R | 18 ++-
R/MCmodels.R | 14 ++
R/automate.R | 11 ++
R/btsutil.R | 20 ++-
R/distn.R | 21 ++-
R/hidden.R | 11 +-
R/procrust.R | 10 ++
R/scythe.R | 12 +-
R/tomog.R | 15 +-
R/utility.R | 13 +-
R/zzz.R | 12 ++
README | 5 +-
debian/changelog | 6 +
debian/compat | 2 +-
debian/control | 8 +-
debian/copyright | 2 +-
debian/rules | 2 +-
man/MCMCSVDreg.Rd | 2 +-
man/MCMCfactanal.Rd | 2 +-
man/MCMCirt1d.Rd | 2 +-
man/MCMCirtHier1d.Rd | 305 ++++++++++++++++++++++++++++++++++++
man/MCMClogit.Rd | 2 +-
man/MCMCmnl.Rd | 10 +-
man/MCMCpoisson.Rd | 2 +-
man/MCMCprobit.Rd | 2 +-
man/MCMCregress.Rd | 2 +-
man/MCMCtobit.Rd | 2 +-
man/PErisk.Rd | 2 +-
src/MCMCSVDreg.cc | 8 +-
src/MCMCdynamicEI.cc | 8 +
src/MCMCfactanal.cc | 8 +-
src/MCMCfcds.h | 93 ++++++++++-
src/MCMChierEI.cc | 6 +
src/MCMCirt1d.cc | 6 +
src/MCMCirtHier1d.cc | 350 ++++++++++++++++++++++++++++++++++++++++++
src/MCMCirtKdRob.cc | 8 +-
src/MCMClogit.cc | 10 +-
src/MCMClogituserprior.cc | 9 +-
src/MCMCmetrop1R.cc | 43 ++++--
src/MCMCmixfactanal.cc | 8 +-
src/MCMCmnl.h | 9 +-
src/MCMCmnlMH.cc | 9 +-
src/MCMCmnlslice.cc | 9 +-
src/MCMCoprobit.cc | 9 +-
src/MCMCordfactanal.cc | 8 +-
src/MCMCpoisson.cc | 9 +-
src/MCMCpoissonChangepoint.cc | 6 +-
src/MCMCprobit.cc | 8 +-
src/MCMCprobitres.cc | 9 +-
src/MCMCregress.cc | 8 +-
src/MCMCrng.h | 8 +-
src/MCMCtobit.cc | 9 +-
75 files changed, 1561 insertions(+), 138 deletions(-)
diff --cc debian/changelog
index 09fe0cb,0000000..cc19688
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,208 -1,0 +1,214 @@@
++mcmcpack (0.9-6-1) unstable; urgency=low
++
++ * New upstream release.
++
++ -- Chris Lawrence <lawrencc at debian.org> Mon, 16 Mar 2009 22:18:40 -0500
++
+mcmcpack (0.9-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 04 Mar 2008 14:52:43 -0600
+
+mcmcpack (0.9-3-1) unstable; urgency=low
+
+ * New upstream release.
+ * Fix FTBFS on amd64. (Closes: #417427)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 01 Mar 2008 22:51:00 -0600
+
+mcmcpack (0.9-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 07 Oct 2007 20:16:55 -0500
+
+mcmcpack (0.9-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 03 Sep 2007 15:39:59 -0500
+
+mcmcpack (0.8-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jul 2007 17:27:59 -0500
+
+mcmcpack (0.8-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 20 Jan 2007 21:45:31 -0600
+
+mcmcpack (0.7-4-2) unstable; urgency=low
+
+ * Look for trunc() in -lm, to fix FTBFS on m68k (and possibly other
+ platforms?). (Closes: #389400)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 8 Oct 2006 18:21:07 -0500
+
+mcmcpack (0.7-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Oct 2006 02:12:06 -0500
+
+mcmcpack (0.7-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 21 Sep 2006 21:30:32 -0500
+
+mcmcpack (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 1 Jun 2006 16:10:06 -0400
+
+mcmcpack (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revise description to omit discussion of "upcoming" models that don't
+ seem to be upcoming; add suggestions of bayesm, eco, and mnp to fill
+ in some of the gaps.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 29 Jan 2006 22:01:22 -0500
+
+mcmcpack (0.6-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 08:59:17 -0500
+
+mcmcpack (0.6-5-2) unstable; urgency=low
+
+ * Fix FTBFS with gcc 4.0.2-3 and later. (Closes: #336281)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Oct 2005 23:40:09 -0400
+
+mcmcpack (0.6-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jun 2005 16:03:34 -0500
+
+mcmcpack (0.6-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 2 Apr 2005 23:07:43 -0600
+
+mcmcpack (0.6-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 3 Mar 2005 19:01:23 -0600
+
+mcmcpack (0.5-2-4) unstable; urgency=low
+
+ * Really fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 11 Oct 2004 10:56:34 -0500
+
+mcmcpack (0.5-2-3) unstable; urgency=low
+
+ * Fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Oct 2004 21:25:59 -0500
+
+mcmcpack (0.5-2-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 8 Oct 2004 00:24:03 -0500
+
+mcmcpack (0.5-2-1) unstable; urgency=low
+
+ * New upstream release. Kudos to Andrew, Kevin, and Pierre L'Ecuyer for
+ their quick response to license issues with 0.5-1.
+ * Now require r-cran-coda (>> 0.8).
+ * Include HISTORY file as upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Aug 2004 21:38:55 -0500
+
+mcmcpack (0.4-8-2) unstable; urgency=low
+
+ * Update dependencies for r-recommended package split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 3 May 2004 14:15:55 -0500
+
+mcmcpack (0.4-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Feb 2004 23:35:33 -0600
+
+mcmcpack (0.4-7-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update control file description for new upstream URL.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Feb 2004 16:50:13 -0600
+
+mcmcpack (0.4-6-1) unstable; urgency=low
+
+ * New upstream release
+ + Fixed a bug in rnoncenhypergeom()
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 5 Dec 2003 10:33:51 -0600
+
+mcmcpack (0.4-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 17 Nov 2003 13:17:39 -0600
+
+mcmcpack (0.4-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 13 Oct 2003 08:19:13 -0500
+
+mcmcpack (0.4-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revised packaging to be more compatible with new upstream versions.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Aug 2003 22:44:39 -0500
+
+mcmcpack (0.4-1-1) unstable; urgency=low
+
+ * The "my days of being ABD are close to being over" release.
+ * New upstream release.
+ * New features:
+ + Metric and ordinal factor analysis models.
+ + k-dimensional item response theory model.
+ + A few new density and random draw functions.
+ * Install package to /usr/lib/R/site-library.
+ * Updated to standards-version 3.5.10; no substantive changes.
+ * Add Daniel Pemstein to upstream authors.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jun 2003 14:11:07 -0500
+
+mcmcpack (0.3-11-3) unstable; urgency=low
+
+ * Remove build hack now that R 1.7.0 has been released incorporating the
+ needed fix.
+ * Depend on r-recommended and r-base-core; remove r-base dependency.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 11:33:45 -0500
+
+mcmcpack (0.3-11-2) unstable; urgency=medium
+
+ * Depend on r-cran-coda. (Closes: #187071)
+ * Note in the description that other samplers are used, in addition to
+ Gibbs sampling.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 5 Apr 2003 22:29:25 -0600
+
+mcmcpack (0.3-11-1) unstable; urgency=low
+
+ * Initial Release. (Closes: #169717)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 30 Mar 2003 08:10:27 -0600
diff --cc debian/compat
index b8626c4,0000000..7f8f011
mode 100644,000000..100644
--- a/debian/compat
+++ b/debian/compat
@@@ -1,1 -1,0 +1,1 @@@
- 4
++7
diff --cc debian/control
index 1a8c8c6,0000000..9bc248f
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,37 -1,0 +1,37 @@@
+Source: mcmcpack
- Section: math
++Section: gnu-r
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
- Build-Depends: debhelper (>> 4.0.0), r-base-dev (>> 2.5.0), r-cran-coda (>= 0.11-3), r-cran-vr (>> 7.2.8)
- Standards-Version: 3.7.3
++Build-Depends: debhelper (>> 7), r-base-dev (>> 2.8.0), r-cran-coda (>= 0.11-3), r-cran-vr (>> 7.2.8)
++Standards-Version: 3.8.1
+Homepage: http://mcmcpack.wustl.edu/
+
+Package: r-cran-mcmcpack
+Architecture: any
- Depends: r-base-core (>> 2.5.0), ${shlibs:Depends}, r-cran-coda (>> 0.11-3), r-cran-vr (>> 7.2.8)
++Depends: r-base-core (>> 2.8.0), ${shlibs:Depends}, r-cran-coda (>> 0.11-3), r-cran-vr (>> 7.2.8), ${misc:Depends}
+Suggests: r-cran-bayesm, r-cran-eco, r-cran-mnp
+Description: GNU R routines for Markov chain Monte Carlo model estimation
+ This is a set of routines for GNU R that implement various
+ statistical and econometric models using Markov chain Monte Carlo
+ (MCMC) estimation, which allows "solving" models that would otherwise
+ be intractable with traditional techniques, particularly problems in
+ Bayesian statistics (where one or more "priors" are used as part of
+ the estimation procedure, instead of an assumption of ignorance about
+ the "true" point estimates), although MCMC can also be used to solve
+ frequentist statistical problems with uninformative priors. MCMC
+ techniques are also preferable over direct estimation in the presence
+ of missing data.
+ .
+ Currently implemented are a number of ecological inference (EI)
+ routines (for estimating individual-level attributes or behavior from
+ aggregate data, such as electoral returns or census results), as well
+ as models for traditional linear panel and cross-sectional data, some
+ visualization routines for EI diagnostics, two item-response theory
+ (or ideal-point estimation) models, metric, ordinal, and
+ mixed-response factor analysis, and models for Gaussian (linear) and
+ Poisson regression, logistic regression (or logit), and binary and
+ ordinal-response probit models.
+ .
+ The suggested packages (r-cran-bayesm, -eco, and -mnp) contain
+ additional models that may also be useful for those interested in
+ this package.
diff --cc debian/copyright
index c2392e9,0000000..a384dfb
mode 100644,000000..100644
--- a/debian/copyright
+++ b/debian/copyright
@@@ -1,26 -1,0 +1,26 @@@
+This package was debianized by Chris Lawrence <lawrencc at debian.org> on
+Sun, 30 Mar 2003 08:10:27 -0600.
+
+It was downloaded from http://mcmcpack.wustl.edu/
+
+Upstream Authors: Andrew D. Martin <admartin at artsci.wustl.edu>,
+ Kevin M. Quinn <kquinn at latte.harvard.edu>, and Daniel Pemstein.
+
+Copyright:
+ © 2003 Andrew D. Martin, Kevin M. Quinn, and Daniel Pemstein.
+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; version 2 dated June, 1991.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU General
- Public License can be found in `/usr/share/common-licenses/GPL'.
++Public License can be found in `/usr/share/common-licenses/GPL-2'.
diff --cc debian/rules
index cf86949,0000000..193255d
mode 100755,000000..100755
--- a/debian/rules
+++ b/debian/rules
@@@ -1,111 -1,0 +1,111 @@@
+#!/usr/bin/make -f
+# Sample debian/rules that uses debhelper.
+# GNU copyright 1997 to 1999 by Joey Hess.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+package = r-cran-mcmcpack
+Rpackage = MCMCpack
+
+#tgz := $(Rpackage)_0.4-1.tar.gz
+debbase := $(CURDIR)/debian
+debtmp := $(debbase)/r-cran-mcmcpack
+debRlib := $(debtmp)/usr/lib/R/site-library
+debRpkg := $(debRlib)/$(Rpackage)
+debdoc := $(debtmp)/usr/share/doc/$(package)
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+ INSTALL_PROGRAM += -s
+endif
+
+get-orig-source: upstream
+upstream:
+ links http://cran.us.r-project.org/src/contrib
+
+build: build-stamp
+
+build-stamp:
+ dh_testdir
+ touch build-stamp
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+ [ ! -f Makefile ] || $(MAKE) distclean
+ -rm -f `find . -name "*~"`
+ -rm -rf debian/tmp debian/files* core debian/substvars
+ -rm -f doc/html/function.html doc/html/packages.html
+ -rm -f config.cache config.status config.log
+ -rm -rf MCMCpack
+ touch configure.ac && touch configure
+ dh_clean
+
+install: install-stamp
+
+install-stamp: DH_OPTIONS=
+install-stamp: build
+ dh_testdir
+ dh_testroot
- dh_clean -k
++ dh_prep
+ dh_installdirs usr/lib/R/site-library
+ #tar -zxf $(tgz)
+ #/usr/bin/R CMD INSTALL -l $(debRlib) --clean MCMCpack
+ /usr/bin/R CMD INSTALL -l $(debRlib) --clean $(CURDIR)
+ #mv $(debRlib)/mcmcpack-* $(debRpkg)
+ rm -vf $(debRlib)/R.css $(debRpkg)/COPYING $(debRpkg)/LICENSE
+ touch install-stamp
+
+# Pass -i to all debhelper commands in this target to reduce clutter.
+binary-indep: DH_OPTIONS=-i
+binary-indep: build install
+
+# Build architecture-dependent files here.
+# Pass -a to all debhelper commands in this target to reduce clutter.
+binary-arch: DH_OPTIONS=-a
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs HISTORY
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+# dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+# dh_perl
+# dh_python
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-mcmcpack.git
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