[scikit-learn] branch master updated (ad1e435 -> 09aa89d)
Andreas Tille
tille at debian.org
Thu Dec 29 12:42:13 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository scikit-learn.
from ad1e435 Fix watch file
adds 96e9f2f New upstream version 0.18.1
new 4e792db Merge tag 'upstream/0.18.1'
new 09aa89d New upstream version
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 17 +-
README.rst | 28 +-
appveyor.yml | 10 +
build_tools/circle/build_doc.sh | 12 +-
build_tools/circle/push_doc.sh | 22 +-
build_tools/cythonize.py | 198 -----
build_tools/travis/flake8_diff.sh | 70 +-
build_tools/travis/install.sh | 24 +-
build_tools/travis/test_script.sh | 5 +-
circle.yml | 5 +-
debian/changelog | 3 +-
debian/patches/deb_disable_google_anals | 2 +-
debian/patches/deb_no_google_analytics | 2 +-
debian/patches/deb_no_plot_gallery | 2 +-
debian/patches/deb_no_tinyclues_external_image | 4 +-
debian/patches/deb_nopaypal | 4 +-
debian/patches/deb_optional_linkcode | 7 +-
debian/patches/deb_skip_some_tests_on_arm | 2 +-
debian/patches/deb_tests_lower_precision | 2 +-
debian/patches/deb_use_system_joblib | 29 +-
debian/patches/up_workaround_buggy_pil | 2 +-
doc/about.rst | 15 +-
doc/conf.py | 8 +
doc/datasets/index.rst | 52 ++
doc/datasets/labeled_faces_fixture.py | 2 +-
doc/datasets/rcv1.rst | 2 +-
doc/datasets/twenty_newsgroups_fixture.py | 3 +-
doc/developers/advanced_installation.rst | 2 +-
doc/developers/contributing.rst | 79 +-
doc/documentation.rst | 2 +-
doc/faq.rst | 41 +-
doc/index.rst | 2 +
doc/install.rst | 4 +-
doc/modules/classes.rst | 75 +-
doc/modules/grid_search.rst | 9 +-
doc/modules/linear_model.rst | 2 +-
doc/modules/model_evaluation.rst | 6 +-
doc/modules/multiclass.rst | 31 +-
doc/modules/neural_networks_supervised.rst | 4 +-
doc/modules/outlier_detection.rst | 2 +-
doc/modules/preprocessing.rst | 4 +-
doc/sphinxext/sphinx_issues.py | 117 +++
doc/templates/{class.rst => deprecated_class.rst} | 7 +
...ith_call.rst => deprecated_class_with_call.rst} | 7 +
..._init.rst => deprecated_class_without_init.rst} | 7 +
.../{function.rst => deprecated_function.rst} | 7 +
doc/templates/generate_deprecated.sh | 8 +
doc/testimonials/testimonials.rst | 6 +-
doc/themes/scikit-learn/layout.html | 9 +-
doc/themes/scikit-learn/static/jquery.js | 4 +
.../scikit-learn/static/jquery.maphilight.min.js | 1 +
doc/themes/scikit-learn/static/js/bootstrap.min.js | 6 +
doc/themes/scikit-learn/static/js/copybutton.js | 29 +-
doc/themes/scikit-learn/static/nature.css_t | 33 +-
doc/tutorial/basic/tutorial.rst | 58 +-
.../text_analytics/working_with_text_data.rst | 1 -
doc/whats_new.rst | 805 +++++++++---------
examples/ensemble/plot_isolation_forest.py | 2 +-
examples/linear_model/plot_logistic.py | 15 +-
examples/svm/plot_iris.py | 4 +-
.../text/document_classification_20newsgroups.py | 10 +-
setup.py | 37 +-
sklearn/__check_build/setup.py | 2 +-
sklearn/__init__.py | 2 +-
sklearn/_build_utils/__init__.py | 51 +-
sklearn/base.py | 2 +-
sklearn/calibration.py | 43 +-
sklearn/cluster/bicluster.py | 1 +
sklearn/cluster/k_means_.py | 25 +-
sklearn/cluster/setup.py | 26 +-
sklearn/covariance/graph_lasso_.py | 8 +-
sklearn/covariance/outlier_detection.py | 36 +-
sklearn/cross_decomposition/tests/test_pls.py | 3 +-
sklearn/cross_validation.py | 64 ++
sklearn/datasets/lfw.py | 22 +-
sklearn/datasets/mldata.py | 12 +-
sklearn/datasets/olivetti_faces.py | 2 +-
sklearn/datasets/samples_generator.py | 20 +-
sklearn/datasets/setup.py | 2 +-
sklearn/datasets/species_distributions.py | 2 +-
sklearn/datasets/svmlight_format.py | 16 +-
sklearn/datasets/tests/test_20news.py | 18 +-
sklearn/datasets/tests/test_base.py | 8 +-
sklearn/datasets/twenty_newsgroups.py | 20 +-
sklearn/decomposition/dict_learning.py | 30 +-
sklearn/decomposition/nmf.py | 22 -
sklearn/decomposition/online_lda.py | 2 +-
sklearn/decomposition/pca.py | 19 +-
sklearn/decomposition/setup.py | 4 +-
sklearn/decomposition/tests/test_fastica.py | 3 +-
sklearn/decomposition/tests/test_nmf.py | 17 +-
sklearn/decomposition/tests/test_pca.py | 13 +
sklearn/decomposition/tests/test_truncated_svd.py | 2 +-
sklearn/decomposition/truncated_svd.py | 13 +-
sklearn/discriminant_analysis.py | 35 +-
sklearn/ensemble/base.py | 5 +
sklearn/ensemble/forest.py | 25 +-
sklearn/ensemble/gradient_boosting.py | 10 +-
sklearn/ensemble/iforest.py | 2 +-
sklearn/ensemble/partial_dependence.py | 11 +-
sklearn/ensemble/setup.py | 2 +-
sklearn/ensemble/tests/test_base.py | 26 +-
sklearn/ensemble/tests/test_gradient_boosting.py | 2 +-
.../tests/test_gradient_boosting_loss_functions.py | 3 +-
sklearn/externals/joblib/__init__.py | 138 ++++
sklearn/externals/joblib/_compat.py | 20 +
sklearn/externals/joblib/_memory_helpers.py | 105 +++
.../externals/joblib/_multiprocessing_helpers.py | 39 +
sklearn/externals/joblib/_parallel_backends.py | 360 ++++++++
sklearn/externals/joblib/disk.py | 106 +++
sklearn/externals/joblib/format_stack.py | 417 ++++++++++
sklearn/externals/joblib/func_inspect.py | 354 ++++++++
sklearn/externals/joblib/hashing.py | 262 ++++++
sklearn/externals/joblib/logger.py | 157 ++++
sklearn/externals/joblib/memory.py | 918 +++++++++++++++++++++
sklearn/externals/joblib/my_exceptions.py | 112 +++
sklearn/externals/joblib/numpy_pickle.py | 577 +++++++++++++
sklearn/externals/joblib/numpy_pickle_compat.py | 239 ++++++
sklearn/externals/joblib/numpy_pickle_utils.py | 623 ++++++++++++++
sklearn/externals/joblib/parallel.py | 783 ++++++++++++++++++
sklearn/externals/joblib/pool.py | 615 ++++++++++++++
sklearn/externals/joblib/testing.py | 93 +++
sklearn/feature_extraction/dict_vectorizer.py | 6 +-
sklearn/feature_extraction/setup.py | 2 +-
.../tests/test_feature_hasher.py | 7 +-
sklearn/feature_extraction/tests/test_image.py | 3 +-
sklearn/feature_extraction/tests/test_text.py | 26 +-
sklearn/feature_extraction/text.py | 24 +-
sklearn/feature_selection/from_model.py | 10 +-
sklearn/feature_selection/rfe.py | 17 +-
sklearn/feature_selection/tests/test_base.py | 2 +-
sklearn/feature_selection/tests/test_chi2.py | 2 +-
.../feature_selection/tests/test_feature_select.py | 51 +-
sklearn/feature_selection/tests/test_from_model.py | 14 +-
sklearn/feature_selection/tests/test_rfe.py | 29 +-
sklearn/feature_selection/univariate_selection.py | 6 +-
sklearn/gaussian_process/gaussian_process.py | 9 +-
sklearn/gaussian_process/gpc.py | 8 +-
sklearn/gaussian_process/gpr.py | 14 +-
.../tests/test_gaussian_process.py | 15 +-
sklearn/gaussian_process/tests/test_gpr.py | 4 +-
sklearn/grid_search.py | 19 +
sklearn/lda.py | 16 +-
sklearn/learning_curve.py | 24 +-
sklearn/linear_model/coordinate_descent.py | 15 +-
sklearn/linear_model/logistic.py | 103 +--
sklearn/linear_model/omp.py | 2 +-
sklearn/linear_model/ransac.py | 4 +-
sklearn/linear_model/ridge.py | 41 +-
sklearn/linear_model/sag.py | 4 +-
sklearn/linear_model/setup.py | 6 +-
.../linear_model/tests/test_coordinate_descent.py | 33 +
sklearn/linear_model/tests/test_least_angle.py | 13 +-
sklearn/linear_model/tests/test_logistic.py | 69 +-
sklearn/linear_model/tests/test_ridge.py | 19 +-
sklearn/linear_model/tests/test_sgd.py | 2 +-
sklearn/linear_model/tests/test_theil_sen.py | 5 +-
sklearn/manifold/locally_linear.py | 4 +-
sklearn/manifold/setup.py | 4 +-
sklearn/manifold/t_sne.py | 14 +-
sklearn/manifold/tests/test_locally_linear.py | 14 +-
sklearn/manifold/tests/test_mds.py | 2 +-
sklearn/manifold/tests/test_spectral_embedding.py | 8 +-
sklearn/manifold/tests/test_t_sne.py | 65 ++
sklearn/metrics/classification.py | 10 +-
sklearn/metrics/cluster/setup.py | 2 +-
sklearn/metrics/cluster/supervised.py | 16 +-
sklearn/metrics/cluster/tests/test_supervised.py | 10 +-
sklearn/metrics/pairwise.py | 11 +-
sklearn/metrics/ranking.py | 6 +-
sklearn/metrics/regression.py | 13 +-
sklearn/metrics/setup.py | 2 +-
sklearn/metrics/tests/test_common.py | 37 +-
sklearn/metrics/tests/test_pairwise.py | 30 +
sklearn/mixture/base.py | 10 +-
sklearn/mixture/bayesian_mixture.py | 2 +-
sklearn/mixture/dpgmm.py | 19 +-
sklearn/mixture/gaussian_mixture.py | 10 +-
sklearn/mixture/gmm.py | 9 +
sklearn/mixture/tests/test_gaussian_mixture.py | 18 +-
sklearn/mixture/tests/test_gmm.py | 6 +-
sklearn/model_selection/_search.py | 15 +-
sklearn/model_selection/_split.py | 71 +-
sklearn/model_selection/_validation.py | 18 +-
sklearn/model_selection/tests/common.py | 23 +
sklearn/model_selection/tests/test_search.py | 75 +-
sklearn/model_selection/tests/test_split.py | 166 +++-
sklearn/model_selection/tests/test_validation.py | 122 ++-
sklearn/multiclass.py | 33 +-
sklearn/neighbors/dist_metrics.pyx | 21 +-
sklearn/neighbors/nearest_centroid.py | 2 +-
sklearn/neighbors/regression.py | 2 +-
sklearn/neighbors/setup.py | 8 +-
sklearn/neighbors/tests/test_dist_metrics.py | 28 +-
sklearn/neighbors/unsupervised.py | 2 +-
sklearn/neural_network/multilayer_perceptron.py | 2 +-
sklearn/pipeline.py | 13 +-
sklearn/preprocessing/_function_transformer.py | 2 +-
sklearn/preprocessing/data.py | 16 +-
sklearn/preprocessing/label.py | 15 +-
.../tests/test_function_transformer.py | 30 +-
sklearn/preprocessing/tests/test_imputation.py | 41 +-
sklearn/preprocessing/tests/test_label.py | 4 +
sklearn/qda.py | 16 +-
.../tests/test_label_propagation.py | 4 +-
sklearn/setup.py | 15 +-
sklearn/svm/base.py | 2 +-
sklearn/svm/setup.py | 10 +-
sklearn/svm/tests/test_bounds.py | 11 +-
sklearn/svm/tests/test_sparse.py | 5 +-
sklearn/svm/tests/test_svm.py | 46 +-
sklearn/tests/test_calibration.py | 43 +-
sklearn/tests/test_common.py | 75 +-
sklearn/tests/test_discriminant_analysis.py | 18 +-
sklearn/tests/test_learning_curve.py | 27 +
sklearn/tests/test_multiclass.py | 43 +-
sklearn/tests/test_pipeline.py | 33 +-
sklearn/tree/_criterion.pxd | 1 +
sklearn/tree/_criterion.pyx | 9 +-
sklearn/tree/_tree.pyx | 3 +-
sklearn/tree/_utils.pyx | 4 +-
sklearn/tree/setup.py | 8 +-
sklearn/tree/tests/test_export.py | 5 +-
sklearn/tree/tests/test_tree.py | 138 +++-
sklearn/tree/tree.py | 173 ++--
sklearn/utils/_random.pyx | 16 +-
sklearn/utils/estimator_checks.py | 152 +++-
sklearn/utils/fixes.py | 21 +-
sklearn/utils/setup.py | 26 +-
sklearn/utils/sparsetools/setup.py | 12 +-
sklearn/utils/sparsetools/tests/test_traversal.py | 4 +-
sklearn/utils/testing.py | 54 +-
sklearn/utils/tests/test_bench.py | 2 +-
sklearn/utils/tests/test_estimator_checks.py | 19 +
sklearn/utils/tests/test_extmath.py | 4 +-
sklearn/utils/tests/test_fast_dict.py | 3 +-
sklearn/utils/tests/test_fixes.py | 23 +-
sklearn/utils/tests/test_metaestimators.py | 2 +-
sklearn/utils/tests/test_murmurhash.py | 2 +-
sklearn/utils/tests/test_seq_dataset.py | 4 +-
sklearn/utils/tests/test_testing.py | 3 +-
sklearn/utils/tests/test_validation.py | 4 +-
242 files changed, 9401 insertions(+), 1811 deletions(-)
delete mode 100755 build_tools/cythonize.py
create mode 100644 doc/sphinxext/sphinx_issues.py
copy doc/templates/{class.rst => deprecated_class.rst} (81%)
copy doc/templates/{class_with_call.rst => deprecated_class_with_call.rst} (83%)
copy doc/templates/{class_without_init.rst => deprecated_class_without_init.rst} (77%)
copy doc/templates/{function.rst => deprecated_function.rst} (77%)
create mode 100755 doc/templates/generate_deprecated.sh
create mode 100644 doc/themes/scikit-learn/static/jquery.js
create mode 100644 doc/themes/scikit-learn/static/jquery.maphilight.min.js
create mode 100644 doc/themes/scikit-learn/static/js/bootstrap.min.js
create mode 100644 sklearn/externals/joblib/__init__.py
create mode 100644 sklearn/externals/joblib/_compat.py
create mode 100644 sklearn/externals/joblib/_memory_helpers.py
create mode 100644 sklearn/externals/joblib/_multiprocessing_helpers.py
create mode 100644 sklearn/externals/joblib/_parallel_backends.py
create mode 100644 sklearn/externals/joblib/disk.py
create mode 100644 sklearn/externals/joblib/format_stack.py
create mode 100644 sklearn/externals/joblib/func_inspect.py
create mode 100644 sklearn/externals/joblib/hashing.py
create mode 100644 sklearn/externals/joblib/logger.py
create mode 100644 sklearn/externals/joblib/memory.py
create mode 100644 sklearn/externals/joblib/my_exceptions.py
create mode 100644 sklearn/externals/joblib/numpy_pickle.py
create mode 100644 sklearn/externals/joblib/numpy_pickle_compat.py
create mode 100644 sklearn/externals/joblib/numpy_pickle_utils.py
create mode 100644 sklearn/externals/joblib/parallel.py
create mode 100644 sklearn/externals/joblib/pool.py
create mode 100644 sklearn/externals/joblib/testing.py
create mode 100644 sklearn/model_selection/tests/common.py
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