[python-hdf5storage] annotated tag 0.1.12 deleted (was 599ab0e)
Ghislain Vaillant
ghisvail-guest at moszumanska.debian.org
Mon Feb 29 08:28:29 UTC 2016
This is an automated email from the git hooks/post-receive script.
ghisvail-guest pushed a change to annotated tag 0.1.12
in repository python-hdf5storage.
*** WARNING: tag 0.1.12 was deleted! ***
tag was 599ab0e
This change permanently discards the following revisions:
discards 21f38a2 Incremented version to 0.1.12
discards 9c88614 Updated README for the 0.1.12 version.
discards bc87735 Added copyright headers to the Matlab functions used for testing.
discards 904be36 Updated copyright year.
discards 5bb8dd8 Fixed bug in writing numpy chararrays when matlab metadata is included (error comes from conversions).
discards b098793 Added tests for the writing and reading back of empty numpy string arrays with different character numbers as well as fixed a typo in some comments.
discards d923663 Fixed bug where empty string arrays aren't read back with the same dtypes.
discards 9d73496 Added tests for writing and reading back numpy chararrays.
discards af25163 Added tests for writing and reading back numpy recarrays.
discards 7902c1f Added tests for writing and reading back numpy matrix.
discards 6a81f4e Fixed the example code output having the transpose before reshape bug in the documentation.
discards 8ca5a5c Fixed write readback test to not reuse generated options for reading so that the transpose before reshape bug can be checked.
discards eeaaa7f Fixed bug where matlab_compatible was being set to True by default when reading data causing a data transpose before reshaping, corrupting arrays.
discards 48e4976 Incremented version to 0.1.11.
discards 81e9c8e Added documentation on for what was changed in 0.1.11.
discards e6a58a7 Fixed opening mode in loadmat to 'r'.
discards 1f0c24b Incremented version to 0.1.10
discards ce832b6 Updated documentation for version 0.1.10 which added the ability to write and read more than one piece of data at once.
discards f020ad0 Made savemat and loadmat use writes and reads instead of write and read to improve performance.
discards 4d997ed Added tests for reading and writing more than one data item at a time.
discards 2bb70bb Added functions for reading and writing more than one data item at a time (writes and reads) and made write and read into wrappers around them.
discards 987c893 Fixed bug where a structured ndarray with a field having the name 'O' was always written as an HDF5 Group.
discards bc0e960 Updated examples in the documentation to write and read data to /a instead of /
discards 7892490 Documentation updates for compression.
discards c5af0aa Incremented the package version to 0.1.9.
discards 63da84e Updated README for the 0.1.9 release.
discards 8d35b8e Updated documentation to reflect compression being backported to the 0.1.x branch. (cherry picked from commit 56139ce1c3fedc1a0605805bef35a3a1ac4541d9)
discards 0395073 Added compression information to the introduction in the documentation. (cherry picked from commit 95bcf291dbd280c03e3693d0ff2a488e792db7e7)
discards 55992e2 Added documentation page for compression. (cherry picked from commit e8b33a0bf1b4c0897fc7ae7491143ed2000d4325)
discards 15cdeba Made it so that Options would take additional keyword arguments even though it will ignore them to be more compatible with future versions of the package. (cherry picked from commit baffeb1896977e3870aa415c046fce6ce275c9f7)
discards b8e4ac6 Added HDF5 filter tests for writing compressed and uncompressed data. (cherry picked from commit bdd216c3b71e9ff22ccd87bf196053ba09f7f166)
discards 509ac37 Added compression to Options and the Numpy marshaller. (cherry picked from commit b63e610bea6cc66eeaa350ca1a9f127f07cb6631)
discards 28f2f69 Incremented package version to 0.1.8
discards d91c5fb Updated documentation for version 0.1.8
discards c9233ec Fixed bug where structured numpy.ndarrays could be written with null characters and, depending on the case, / in their field names (not valid characters).
discards 4324217 Fixed bug where dicts could be written with null characters and / in their keys
discards ab15800 Fixed bug where the 'MATLAB_class' Attribute is not set when writing dicts.
discards 7ed464c Incremented package version to 0.1.7.
discards 3dc2ac0 Updated README.rst for the 0.1.7 release.
discards baffeb1 Made it so that Options would take additional keyword arguments even though it will ignore them to be more compatible with future versions of the package.
discards 95f9727 Added workaround for reading MAT files with variables larger than 2 GB when the variables to read aren't given explicitly.
discards c19a430 Fixed issue where a local variable having the same name as a global was confusting.
discards cd7f908 Added a test for reading data for any set of HDF5 filters.
discards e49b3ef Removed unused imports in test_write_readback
discards 8b6e6e3 Separated out all the random variable making methods in tests/test_write_readback.py from the master branch into their own test module (tests/make_randoms.py) and made the tests use them.
discards c4b0c58 Incremented version in __init__.py to 0.1.6
discards fa08faa Incremented version to 0.1.6 and added entry to Changelong in README.rst.
discards 8b2f9ae Fixed bug on 32-bit Python 2.x with determining the maximum int size.
discards 97364e7 Updated documentation for the 0.1.5 release.
discards 24e17a8 Writing non-ASCII numpy.bytes_ when using MATLAB formatting now throws an exception.
discards 1addbf5 Added to the tests a check for preservaation of the ordering of the fields for structured numpy.ndarrays.
discards 76cfc04 Fixes for the string conversions to read and write UTF-8 encoded fields of structured numpy.ndarrays on Python 2.x.
discards 88caa63 Added tests for write-readback of bytes encoded in UTF-8 and structured numpy.ndarray with non-ascii or UTF-8 encoded fields.
discards 9e811a7 Added tests for write-readback of longs and an error being raised when trying to write an int or long too big for a numpy.int64.
discards be360ae Fixed bug where structured ndarrays with UTF-8 encoded fields couldn't be written in Python 2.x
discards feb6f02 Code cleanup and comment updating in Marshallers.
discards 18fdf88 Fixed bug where structured ndarrays with non-ascii characters in fields couldn't be read in Python 2.x
discards eef4ded Fixed bug from isinstance(True, int) being True in Python 3.x
discards 8ecd25c Fixed bug in Python 3.x where having a structured numpy.ndarray with a field with a non-ascii character threw UnicodeEncodeError instead of the UnicodeDecodeError that was originally expected.
discards dd04627 Fixed bug where python 2.x longs could not be written.
discards a33f0dd Added code to throw exception for longs that are too big to fit into a numpy.int64.
discards bc7c5e6 Incremented version to 0.1.5
discards 006539d Updated documentation to reflect the too large int bug fix.
discards f6aca67 Fixed bug where too big a number can be read into an int in Python 2.x. Gets read into a long if this is the case.
discards 8ff4dfb Updated copyright years.
discards 53c17fb Incremented the version to 0.1.4
discards 249114e Fixed README.rst bugfix line that didn't look good when in html.
discards 0196745 Updated README.rst with the bugfix information.
discards 1345ca5 Made the h5py version variable private.
discards b161b78 Added comment to the h5py.__version__ grab and set to 2.0 if not available to explain its presence.
discards db003be Merge pull request #15 from mrdomino/master
discards 603aa1a Fix h5py version detection on old h5py
discards afb1208 MP-77: Fix bug in hdf5storage
discards 30a0d05 Updated version in package source.
discards 0db8e61 Incremented version to 0.1.3 and added text in the README.rst explaining why.
discards 6a49781 Added text to the documentation about this package not using pickling at all and why.
discards 7e96e8e Fixed set syntax error for python 2.6 introduced into the tests.
discards b1c9976 Fixed bug in tests where the partial squeezing of singleton arrays was not detected when no metadata was written.
discards 506fbf7 Fixed bugs in tests where structured numpy.ndarrays which were read right were found to be inequal.
discards bd060b3 Fixed bugs in reading and writing structured numpy.ndarrays, especially empty ones.
discards f2ac363 Added workaround for bug when allocating numpy.ndarray when its dtype.itemsize is zero.
discards 1e9af3c Added structured numpy ndarray tests (both filled and empty).
discards 03f0a58 Made it so that ez_setup.py is for sure included in the manifest.
discards 017d36c Incremented package version to 0.1.2
discards a15966c Updated documentation to reflect code changes and new version.
discards 392909a Removed numpy.float16 support for when the h5py version is less than 2.2 since that was when support for it was introduced.
discards cc763ff Added check for non-unicode keys in PythonDictMarshaller right to the beginning of the writing process so that nothing is changed if there is a non-unicode key.
discards d6c1a7d Fixed bug where structured numpy.ndarrays with a field having an 'object' type is written as an HDF5 COMPOUND when the structured_numpy_ndarray_as_struct option is disabled. Is now written as a GROUP instead as if the option was set.
discards 41731cf Made it so that the MATLAB_fields Attribute is properly used on structures to order the fields in the right order.
discards 99d573c Fixed writing of empty matlab structs to use a Dataset with the appropriate fields attributes set and several reading errors with the new format.
discards 1a1f2d7 Fixed bug in reading empty MATLAB structures.
discards 5ff55a5 Fixed bug in reading empty MATLAB structures.
discards 713276d Fixed bug in reading empty MATLAB structures.
discards 1973e2b Fixed bug in MATLAB_fields Attribute generation for NumpyScalarArrayMarshaller.
discards 6e31b58 Fixed bug in MATLAB_fields Attribute generation for NumpyScalarArrayMarshaller.
discards 9118a9a Added MATLAB_fields Attribute read support for empty structure arrays to the NumpyScalarArrayMarshaller.
discards 72d97a1 Fixed bug where Attribute MATLAB_fields is not deleted for non-structured ndarrays.
discards 29fcef7 Added MATLAB_fields Attribute write support to the NumpyScalarArrayMarshaller.
discards 5a1bf8a Added MATLAB_fields Attribute support to the dict marshaller.
discards 9a271e8 Made it so that MATLAB compatible userblock is put in HDF5 file before data is written as opposed to after (fixes bug where the file becomes not MATLAB compatible if an exception occurs).
discards e2ef6f3 Fixed version in documentation.
discards 286d6ea Incremented version to 0.1.1
discards 031d234 Fixed bug in tests.
discards 94f10e2 Changed a reference to numpy.str_ to numpy.unicode_ so that they will be written as numpy.uin16 if possible on Python 2.
discards 756f869 Removed replace keyword in str.decode for Python 2.6
discards 3037724 Fixed bug in Python2 where str.decode does not use a keyword for the encoding.
discards 946f513 Fixed bug where MATLAB structures could not be read back correctly in Python 2.
discards 1762f64 Fixed string conversion bug in Python 2.
discards 4fd8430 Modified tests to work with real/complex numbers that have NaN part/s.
discards 0189bcd Fixed bug when reading complex numbers where one part is NaN but the other is not.
discards dc3657b Changed tests to work after fixing bug where str was written like numpy.bytes_ instead of like numpy.str_ and added test for writing and reading back unicode characters.
discards c62b3c3 Fixed bug where str was converted to numpy.bytes_ instead of numpy.str_ before writing.
discards 8fe2b6c Changed description.
discards 95fa1ea Last changes to README.rst before releasing package.
discards c9f675f Modified MATLAB test code to reduce output.
discards 0a74e01 Fixed bug where subprocess.check_output is not available on Python 2.6.
discards 77b9800 Renamed MATLAB compatibility tests.
discards 0c5e8c6 Added additional tests to take the data read from MATLAB, send it back, read it back, and compare.
discards 9418e50 Fixed bugs in installer.
discards b338a43 Added tests for reading data written by MATLAB.
discards 20b5798 Fixed bug where loadmat was not returning a dict of the variables and not putting it in mdict if it was given.
discards 90b4296 Formally added Python 2.6 support in the README.rst and the installer.
discards c0eaddf Fixed bug on Python 2.6 where the encoding to bytes.decode needs to be given as the first positional argument as opposed to as a keyword argument.
discards 7aa9e8a Fixed bug on Python 2.6 where byterray.fromhex was given a non-unicode argument.
discards f5b59b5 Fixed bug on Python 2.6 where sys.version_info is just a tuple unlike in later Python versions.
discards 3166122 Changed all sets to be constructed through set([...]) instead of {...}
discards 1e6a69e Replaced dictionary comprehensions to make code Python 2.6 compatible.
discards f64d310 Added Python 2.7 support.
discards 6b71a13 Moved from using list.copy to copy.deepcopy(list) for Python 2 compatibility.
discards 8145a42 Added a development information page in the documentation.
discards 7c4d561 Added license info in README.rst
discards e3fa8a1 Renamed all the different string converters in utilities from starting with decode_to to convert_to
discards b585cc0 Added/changed code to handle empty structured ndarrays.
discards 2c059a0 Fixed a bug where a dict with no members was marked with metadata as a zero sized struct, instead of one with no fields.
discards 7cebd72 Added read/write numpy.recarray support.
discards 03c0586 Updated documentation.
discards 18210e6 Renamed the Attribute Python.numpy.Fields to Python.Fields and made it so that if it wasn't given, fields are sorted when making a structured ndarray.
discards 8df8175 Changed the setting of string array attributes to use str instead of np.bytes_ (unicode instead of ASCII).
discards cf753c7 Updated documentation with regards to reading/writing structured numpy.ndarrays and fixed errors.
discards 917d99b Fixed tests to work with how dicts are read back as structured np.ndarrays if python metadata isn't stored.
discards 39a97c7 Renamed the fielded_numpy_ndarray_as_struct option to structured_numpy_ndarray_as_struct.
discards 7e261a8 Changed the default marshaller for HDF5 Groups to be NumpyScalarArrayMarshaller as opposed to PythonDictMarshaller.
discards 05aac0c Made it so that structured numpy.ndarrays with one element have their fields written as is as opposed to packing them into HDF5 Reference arrays, and made it so they can be read back correctly.
discards 9608d03 Removed commented out code.
discards 84dc2ff Added read support for structured numpy.ndarrays as they are, as opposed to reading them as dicts.
discards 40c4b68 Moved the code to read an h5py.Reference array and make a numpy.object_ array from it to a function.
discards 9194e81 Fixed missing information about exceptions in docstrings.
discards 3b355b6 Updated documentation.
discards de1364b Added the use of the canonical empty inside the group for references.
discards f381b8d Added write support for numpy.ndarrays that have fields in their dtype as Groups/matlab structures.
discards 760d2e7 Documentation and docstring updates and fixes.
discards 82774db Fixed bugs in documentation.
discards 10067f0 Fixed bugs in tests resulting from the changes in how matlab incompatible types are written.
discards 742f1eb Added ability to discard or throw an error when writing a matlab incompatible type when doing matlab compatibility.
discards bc4bab8 Added numpy.void support.
discards 9b5c74c Added numpy.chararray support.
discards 85cd471 Added more information to setup.py
discards a0f1a5b Added licence header to test files.
discards 6924018 Added more documentation regarding the matlab_compatible option and how types are read back from MAT files.
discards 5bd9cfe Renamed the store_type_information option to store_python_metadata.
discards cd4309a Fixed bugs where the name keyword argument was not updated to path in savemat and loadmat.
discards 1b70ac1 Added documentation on the storage format.
discards 12a6eec Finished rest of introduction.rst in the documentation.
discards 3fe9b62 Renamed name arguments in read and write functions to path.
discards 76ab931 Reorganized table in README.
discards 444dc47 Fixed error in README where the other numpy integer types were not in the table of supported types.
discards bb295d3 Created a skeleton introduction in the documentation and then moved the examples from __init__.py to it and updated them.
discards b5a0169 Added main information page to documentation (replicate of README.rst) and adjusted titles.
discards a6472a2 Added existing file truncation options to savemat.
discards 47f2cf4 Added a loadmat function modelled after scipy.io.loadmat.
discards bc4f382 Added a savemat function modelled after scipy.io.savemat.
discards e7ca164 Renamed the convert_scalars_to_arrays option to make_atleast_2d.
discards 4c75ef1 Added oned_as option to control whether 1D arrays become row or column vectors when converted to 2D.
discards 73c79d1 Adjuste appearance of the first table in the README.
discards 3cb8514 Added write readback tests for dicts.
discards 048e24a Moved the none format (not type or matlab information) and the matlab format assertion functions to tests/asserts.py as well as consolidating the assertions for different types together and adding in assertial code for dictionaries.
discards bf3702e Added custom assert functions for the tests into their own module.
discards 192f430 Updated documentation on the utilities module.
discards 7526cdc Renamed decoders for numpy bytes_ and str_ in utilities.
discards ec11484 Added an option to optionally convert numpy.str_ to np.uint16 in UTF-16 format and changed it so that str is converted to numpy.str_ instead of numpy.bytes_.
discards 349b676 Renamed the convert_strings_to_utf16 option to convert_numpy_bytes_to_utf16.
discards 470bd87 Parameterized the sizes of the random datasets used in the tests.
discards 126e8e4 Added tests for bug where a complex number with one field as NaN but the other not is read back as NaN in both fields.
discards d46aae8 Added write readback tests to file with no python type information stored (either no information or just matlab information).
discards cadb9eb Fixed string encoding and decoding bugs.
discards bbb8638 Rearranged write readback test code and added some comments.
discards 6d5a8e7 Consolidated the assertion functions for python and numpy types together.
discards 9e7b15a Added write readback unit tests for list, tuple, set, frozenset, and collection.deque.
discards 1b3f53e Fixed bug in decoding 3d and higher dimensionality arrays of numpy string types when encoded as uints.
discards 7fc2be1 Split previously 2d array write readback test into 1d, 2d, and 3d cases.
discards a0a9730 Fixed a bug with deleting the H5PATH attribute on numpy.object_ arrays when not doint matlab compatibility.
discards f261dbf Added write readback tests for numpy.object_ type.
discards b078faa Changes to setup.py for using setuptools (forgot to add in the last commit).
discards 5c9b649 Switched from distutils to setuptools for packaging so unit tests could be run from setup.py.
discards 6b2dbc3 Fixed bugs in preserving the shape when reading back arrays of strings (all kinds).
discards 988b052 Added tests for numpy bytes_ and str_ types.
discards d726cab Fixed and rearranged tests.
discards 38dd35d Changed tests over to nose.
discards 54d2b0f Fixed a file clean up bug on error.
discards 3246897 Added numpy bool read writeback tests.
discards 452ba79 Fixed bugs in numpy bools not being converted back to book from uint8 correctly.
discards 62b39fd Added file truncation options for writing.
discards 9e4bc8c Fixed name of the PyTables package and group.
discards 25682d3 Changed option name from MATLAB_comaptible to matlab_compatible.
discards 0923f91 Fixed bug of scalar numpy complex types being turned into arrays when doing write readback.
discards 927e5b2 Fixed issue in test where NaN's were causing equality tests to fail.
discards bb8b912 Added write readback tests for the numerical numpy types (not strings).
discards 5bc85e0 Dropped the C in all the CPython parts of attribute names.
discards 9d8a8e9 Added read/write support for tuple, set, frozenset, and collections.deque.
discards bc9c847 Added read/write support for lists.
discards 1083c70 Added read/write support for numpy.object_ types (become HDF5 references).
discards 0a8db47 Fixed bugs with writing and reading empty strings, in addition to a small file closing bug.
discards 2c8716e Added tests to the manifest.
discards cee850c Added more tests for write and readback when not writing MATLAB metadata.
discards 56cdd73 Added initial tests.
discards 1284b76 Moved items in core module to main module (__init__.py), added examples, and fixed Sphinx based documentation.
discards d2f0a32 Changed manifest to include documentation.
discards 28ed1f0 Fixed documentation and changed references to the aliases np.string_ and np.unicode to their targets np.bytes_ and np.str_.
discards 7b12ec5 Added Sphixnx API documentation structure for Marshallers.
discards 4d24528 Changed calling arguments for core.read and core.write and added their doc strings.
discards 9e75476 Fixed error in README.rst about package functionality.
discards 374e62f Gathered all options keywords in high level read/write functions into a **keywords.
discards a7aa29d Changed default names to read and write data to in the high level functions.
discards 9209376 Added ability to pass an Options object to the high level functions directly.
discards b401071 Added initial Sphinx based documentation.
discards d997d00 Added and fixed documentation.
discards a43da17 Changed the way that None is written.
discards e3e2889 Added what Python types are converted to in numpy in README.rst
discards ef8501e Escaped underscores in README.rst.
discards 54e13e8 Added package installer (distutils) and wrote Readme.
discards 1dd5482 Removed quad support as h5py doesn't support them.
discards e497e0f Changed reading to have the Matlab compatiblity option set to False by default.
discards 3b2e602 Fixed bugs in writing boolean types in a Matlab compatible way.
discards 71a2c88 Fixed bug on writing empty datasets so that Matlab can read them.
discards 844b751 Fixed bugs with reading/writing scalar types and reading complex types.
discards 1a72e51 Fixed reading bugs.
discards f04e283 Added high level read function.
discards 553f044 Added Python string read support and changed it so bytearrays are written as numpy.string_ instead of numpy.uint8.
discards 2089de7 Added utility to convert strings to str, and changed other string conversion utilities to use it.
discards d507cd7 Added read support for dicts.
discards 6b008c4 Removed partial code for the currently impossible to set MATLAB_fields attribute.
discards 649b3d8 Changed the way marshallers for container objects recursively write their elements.
discards 7b8c734 Added read support for Python scaler types and None.
discards 3f75a8d Made utilities.decode_complex more general (can set one or both field names manually).
discards 7631790 Fixed but in complex type encoding where type was not kept constant.
discards 254420b Changed writing of complex types to set complex field names manually.
discards 33124c8 Added utility function to encode complex types to be written to HDF5 file with the right complex field names.
discards 7ebe9aa Added low level, somewhat buggy for strings, read support for Numpy types.
discards 00d15ff Added a function to get an Attribute.
discards d3a5afa API changes in preparation for read support, especially in regard to MATLAB types.
discards 177f9e6 More docstring work and adding a method in the core module.
discards 6ba7878 Small, mostly docstring fixes in core.Options.
discards 69f745a Added minimal docstring for Marshallers module.
discards e779992 Added docstrings to Marshallers.TypeMarshaller.
discards e042e6f Fleshed out the rest of Marshallers.TypeMarshaller to support reading.
discards 94eb039 Fleshed out core.Options (properties and docstrings) and added core module docstring.
discards bbb0482 Fixed bug in writting MATLAB_int_decode attribute for strings.
discards 2ffa814 Fixed error in detection of whether an overwrite is needed based on shape and type information.
discards 8fd3b65 Fixed method call typo.
discards 73450df Added missing import.
discards d22803c Changed line endings to be native.
discards e6d9c0c Initial set of python codes to write only (still need polishing)
discards 3e70816 Added some needed files including license.
discards 8167dd7 Initial commit
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