[pkg-bioc] how to proceed?
Dirk Eddelbuettel
edd@debian.org
Sat, 5 Feb 2005 18:37:48 -0600
On 6 February 2005 at 01:23, Steffen Moeller wrote:
| So, would you contribute cran2deb.pl and we mere mortals do the
| adoptions for more flexibility?
Of course. Matt got a copy aeons ago; I think that is (should) be hanging
around somewhere on alioth.
I also sent a copy to Elijah a few weeks ago when he (rightly) bugged me
about lack of progress on the debianisation of CRAN.
Shall I repost is again on alioth? Problem is, the code is a little messy
and dependent on how I had stuff lined up on my box. Shall we rewrite that
for alioth, or all individually for our home/work machines? May be the
latter as we'll need an esoteric mix of build depends as well...
| For a start I do not see to much of a difference between having a hash
| within the source or external since we are communicating this via
| cvs/subversion anyway.
|
| Maybe we should specify our particular interests within Bioconductor:
|
| Steffen:
|
|
| Special interest:
| Gene Ontology associated packages
| Genotyping (r-cran-qtl (maintained by myself, sponsored by Dirk),
| r-cran-bqtl (on my inofficial todo list)
| Expression data and genefilter
| Limma and LimmaGui, Affymetrix orthologues
|
| What I would use but not be too much interested in for maintenance
| KEGG and other pathway packages
| Mass spectrometry
| *affy*
| *SNP*
|
| Some new development for Bioconductor I am thinking about:
| Link to EnsEMBL
Dirk: BioC: nothing really but some of the general-interest stuff is neat
CRAN: applied econometrics, financial econometrics, applied stats
in sum anything and nothing
Dirk
--
Better to have an approximate answer to the right question than a precise
answer to the wrong question. -- John Tukey as quoted by John Chambers