[pkg-bioc] Re: Bioconductor Debian packages

[Steffen Moeller]

Hi Faheem,

I updated the Packages list after tpday's update. Please try again and
thank you for pointing this out.

Steffen

Faheem Mitha wrote:

>
>
> On Tue, 26 Jul 2005, Steffen Moeller wrote:
>
>> Hi Guys,
>>
>> I am pressed with so many things in parallel at the moment, that I have
>> not cared enough to update the repository. The auto-build packages of
>> bioc are on
>>    http://public.pzr.uni-rostock.de/~moeller/mirror/bioc/builds/
>> Please check this out, I just did, it seems to work. There is a problem
>> with LDAP configuration on that machine which I just circumvented. The
>> packages all start with r-bioc, so do not be too surprised if the debs
>> appear late on ths list.
>>
>> Some data packages are also included, otherwise some packages could not
>> have been compiled. Please forget about this bioinformatics.pzr address
>> for bioconductor packages. These are leftovers from a manual effort in
>> packaging of mine.
>
>
> Excuse my cluelessness, but what is the correct sources.list entry for
> that? I tried
>
> deb http://public.pzr.uni-rostock.de/~moeller/mirror/ ./
>
> but it does not work. For example, I get
>
> After unpacking 4841kB of additional disk space will be used.
> Err http://public.pzr.uni-rostock.de ./ r-bioc-affyplm 1.4.0-0.r2d.1
>   404 Not Found
> Failed to fetch
> http://public.pzr.uni-rostock.de/~moeller/mirror/./bioc/builds/r-bioc-affyplm_1.4.0-0.r2d.1_all.deb
> 404 Not Found
> E: Unable to fetch some archives, maybe run apt-get update or try with
> --fix-missing?
> (sarge1-root)root at io:/home/faheem# wget -c
> http://public.pzr.uni-rostock.de/~moeller/mirror/bioc/builds/r-bioc-affyplm_1.4.0-0.r2d.1_all.deb
>
> --00:25:19--
> http://public.pzr.uni-rostock.de/~moeller/mirror/bioc/builds/r-bioc-affyplm_1.4.0-0.r2d.1_all.deb
>
>            => `r-bioc-affyplm_1.4.0-0.r2d.1_all.deb'
> Resolving public.pzr.uni-rostock.de... 139.30.99.48
> Connecting to public.pzr.uni-rostock.de|139.30.99.48|:80... connected.
> HTTP request sent, awaiting response... 404 Not Found
> 00:25:19 ERROR 404: Not Found.
>
> The version installed is actually 1.4.2, so either the Packages.gz
> needs to be updated, or I'm looking in the wrong place. If the former,
> would you be so kind as to update them?
>
> Thanks.                                                         Faheem.
>
>