[Pkg-octave-devel] Bug#565216: octave3.2: hdf5 failure with load()

Francesco P. Lovergine frankie at debian.org
Wed Jan 13 21:56:02 UTC 2010


Package: octave3.2
Severity: normal

As reported in https://bugs.gentoo.org/show_bug.cgi?id=299876 also in
Debian octave there's a problem in hdf5 format management and that's
very unfortunate because hdf5 is quite an important format.



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error: load: error while reading hdf5 item columnlabels
HDF5-DIAG: Error detected in HDF5 (1.8.3) thread 140488628930384:
  #000: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration failed
    major: Symbol table
    minor: Iteration failed
  #001: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over links
    major: Symbol table
    minor: Iteration failed
  #002: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate over symbol table
    major: Symbol table
    minor: Iteration failed
  #003: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration failed
    major: B-Tree node
    minor: Iteration failed
  #005: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator function failed
    major: B-Tree node
    minor: Unable to list node
  #006: ../../../src/H5Gnode.c line 1019 in H5G_node_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
error: load: error while reading hdf5 item MatrixA
HDF5-DIAG: Error detected in HDF5 (1.8.3) thread 140488628930384:
  #000: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration failed
    major: Symbol table
    minor: Iteration failed
  #001: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over links
    major: Symbol table
    minor: Iteration failed
  #002: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate over symbol table
    major: Symbol table
    minor: Iteration failed
  #003: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #004: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration failed
    major: B-Tree node
    minor: Iteration failed
  #005: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator function failed
    major: B-Tree node
    minor: Unable to list node
  #006: ../../../src/H5Gnode.c line 1019 in H5G_node_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #007: ../../../src/H5Gdeprec.c line 777 in H5Giterate(): group iteration failed
    major: Symbol table
    minor: Iteration failed
  #008: ../../../src/H5G.c line 1532 in H5G_iterate(): error iterating over links
    major: Symbol table
    minor: Iteration failed
  #009: ../../../src/H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate over symbol table
    major: Symbol table
    minor: Iteration failed
  #010: ../../../src/H5Gstab.c line 522 in H5G_stab_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location
  #011: ../../../src/H5B.c line 1302 in H5B_iterate(): B-tree iteration failed
    major: B-Tree node
    minor: Iteration failed
  #012: ../../../src/H5B.c line 1225 in H5B_iterate_helper(): iterator function failed
    major: B-Tree node
    minor: Unable to list node
  #013: ../../../src/H5Gnode.c line 1019 in H5G_node_iterate(): iteration operator failed
    major: Symbol table
    minor: Can't move to next iterator location


-- System Information:
Debian Release: squeeze/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 2.6.32-trunk-686 (SMP w/1 CPU core)
Locale: LANG=it_IT.UTF-8, LC_CTYPE=it_IT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash





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