[SCM] Package UR for Debian branch, master, updated. bc3c39667ab7f39d557fd5ad6ca3537c6540a9d0
Olivier Sallou
olivier.sallou at debian.org
Wed Mar 13 16:14:39 UTC 2013
The following commit has been merged in the master branch:
commit eec815435123a753bd7c7f0dbaefa16390e9fd32
Author: Olivier Sallou <olivier.sallou at debian.org>
Date: Wed Mar 13 17:02:22 2013 +0100
add patch to fix pod2man errors
diff --git a/debian/patches/fix_pod2man_errors b/debian/patches/fix_pod2man_errors
new file mode 100644
index 0000000..45b335c
--- /dev/null
+++ b/debian/patches/fix_pod2man_errors
@@ -0,0 +1,468 @@
+Subject: pod errors
+Description: pod errors generate errors during
+pod2man execution
+Author: Olivier Sallou <osallou at debian.org>
+Forwarded: yes
+Bug: https://rt.cpan.org/Public/Bug/Display.html?id=83927
+Last-Updated: 2013-03-13
+--- a/lib/UR/Util.pm
++++ b/lib/UR/Util.pm
+@@ -228,6 +228,8 @@
+ that is unique compared to $base. If $target is not a subdirectory
+ of $base, then it returns a relative pathname starting with $base.
+
++=back
++
+ =cut
+
+ sub path_relative_to {
+@@ -270,6 +272,8 @@
+
+ This method does not overwrite class methods that already exist.
+
++=back
++
+ =cut
+
+ sub generate_readwrite_methods
+@@ -300,6 +304,8 @@
+
+ =pod
+
++=over
++
+ =item generate_readwrite_methods_override
+
+ UR::Util->generate_readwrite_methods_override
+@@ -311,6 +317,8 @@
+ Same as generate_readwrite_function except that we force the functions
+ into the namespace even if the function is already defined
+
++=back
++
+ =cut
+
+ sub generate_readwrite_methods_override
+@@ -338,6 +346,8 @@
+
+ =pod
+
++=over
++
+ =item generate_readonly_methods
+
+ UR::Util->generate_readonly_methods
+@@ -354,6 +364,8 @@
+
+ This method does not overwrite class methods that already exist.
+
++=back
++
+ =cut
+
+ sub generate_readonly_methods
+@@ -384,6 +396,8 @@
+
+ =pod
+
++=over
++
+ =item mapreduce_grep
+
+ my @matches = UR::Util->map_reduce_grep { shift->some_test } @candidates;
+@@ -396,6 +410,8 @@
+ The test function is called with a single argument, an item from the list to
+ be tested, and should return a true of false value.
+
++=back
++
+ =cut
+
+ sub mapreduce_grep($&@) {
+--- a/lib/UR/ObjectDeprecated.pm
++++ b/lib/UR/ObjectDeprecated.pm
+@@ -336,6 +336,8 @@
+
+ =pod
+
++=over
++
+ =item message_callback
+
+ $sub_ref = UR::ModuleBase->message_callback($type);
+--- a/lib/UR/Object/Type.pm
++++ b/lib/UR/Object/Type.pm
+@@ -582,11 +582,15 @@
+
+ =item all_columnless_property_metas
+
++=back
++
+ Return lists of property meta objects and their names for properties that
+ have no column name.
+
+ =head1 METHODS
+
++=over
++
+ =item property_meta_for_name
+
+ $property_obj = $class_obj->property_meta_for_name($property_name);
+--- a/lib/UR/Namespace/Command/Test/Run.pm
++++ b/lib/UR/Namespace/Command/Test/Run.pm
+@@ -1019,8 +1019,12 @@
+ This many tests should be run in parallel. If --lsf is also specified, then
+ these parallel tests will be submitted as LSF jobs.
+
++=back
++
+ =head1 PENDING FEATURES
+
++=over
++
+ =item automatic remote execution for tests requiring a distinct hardware platform
+
+ =item logging profiling and coverage metrics with each test
+--- a/lib/UR/ModuleBase.pm
++++ b/lib/UR/ModuleBase.pm
+@@ -37,8 +37,6 @@
+
+ =head1 METHODS
+
+-=over 4
+-
+ =cut
+
+ # set up package
+@@ -54,6 +52,8 @@
+
+ =pod
+
++=over 4
++
+ =item C<class>
+
+ $class = $obj->class;
+@@ -811,7 +811,6 @@
+
+ =pod
+
+-=back
+
+ =head1 SEE ALSO
+
+--- a/lib/UR/DataSource.pod
++++ b/lib/UR/DataSource.pod
+@@ -212,6 +212,8 @@
+ listrefs about properties involved in a query. The second-level data is
+ sets of quads:
+
++=back
++
+ =over 2
+
+ =item 1.
+--- a/lib/UR/Context/Process.pm
++++ b/lib/UR/Context/Process.pm
+@@ -74,8 +74,6 @@
+
+ =over 4
+
+-=pod
+-
+ =item get_current
+
+ $ctx = UR::Context::Process->get_current();
+@@ -84,6 +82,8 @@
+
+ Also available as UR::Context->get_process();
+
++=back
++
+ =cut
+
+
+@@ -93,6 +93,8 @@
+
+ =pod
+
++=over
++
+ =item has_changes()
+
+ $bool = UR::Context::Process->has_changes();
+@@ -100,6 +102,8 @@
+ Returns true if the current process has changes which might be committed back to
+ the underlying context.
+
++=back
++
+ =cut
+
+ sub has_changes {
+@@ -116,6 +120,8 @@
+
+ =pod
+
++=over
++
+ =item _create_for_current_process
+
+ $ctx = UR::Context::Process->_create_for_current_process(@PARAMS)
+@@ -126,6 +132,8 @@
+ TODO: Remove the exception from create(), and allow other processes to be
+ created explicitly w/ the appropriate characteristics.
+
++=back
++
+ =cut
+
+ sub _create_for_current_process {
+@@ -157,12 +165,16 @@
+
+ =pod
+
++=over
++
+ =item base_name
+
+ $name = UR::Context::Process->base_name;
+
+ This is C<basename($0, '.pl'))>.
+
++=back
++
+ =cut
+
+ our $base_name = basename($0, '.pl');
+@@ -170,6 +182,8 @@
+
+ =pod
+
++=over
++
+ =item prog_name
+
+ $name = UR::Context::Process->prog_name;
+@@ -184,6 +198,8 @@
+
+ It defaults to C<basename> if unspecified.
+
++=back
++
+ =cut
+
+ our $prog_name;
+@@ -201,6 +217,8 @@
+
+ =pod
+
++=over
++
+ =item pkg_name
+
+ $name = UR::Context::Process->pkg_name;
+@@ -221,6 +239,8 @@
+ defaults to C<base_name>, which in turn defaults to
+ C<basename($0)>.
+
++=back
++
+ =cut
+
+ # NOTE: this should not use App::Debug because App::Debug::level calls it
+@@ -239,6 +259,8 @@
+
+ =pod
+
++=over
++
+ =item title
+
+ $name = UR::Context::Process->title;
+@@ -256,6 +278,8 @@
+ turn defaults to C<base_name> when unspecified, which
+ defaults to C<basename($0)> when unspecified.
+
++=back
++
+ =cut
+
+ our $title;
+@@ -273,6 +297,8 @@
+
+ =pod
+
++=over
++
+ =item version
+
+ $version = UR::Context::Process->version;
+@@ -288,6 +314,8 @@
+ This message defaults to C<$main::VERSION> if not set. Note that
+ C<$main::VERSION> may be C<undef>.
+
++=back
++
+ =cut
+
+ # set/get version
+@@ -306,6 +334,8 @@
+
+ =pod
+
++=over
++
+ =item author
+
+ $author = UR::Context::Process->author;
+@@ -316,6 +346,8 @@
+ or C<undef> if unsuccessful. Without an argument, the current author
+ is returned.
+
++=back
++
+ =cut
+
+ # set/get author
+@@ -334,6 +366,8 @@
+
+ =pod
+
++=over
++
+ =item author_email
+
+ $author_email = UR::Context::Process->author_email;
+@@ -346,6 +380,8 @@
+ address or C<undef> if unsuccessful. Without an argument, the current
+ email address is returned.
+
++=back
++
+ =cut
+
+ # set/return author email address
+@@ -364,6 +400,8 @@
+
+ =pod
+
++=over
++
+ =item support_email
+
+ $support_email = UR::Context::Process->support_email;
+@@ -376,6 +414,8 @@
+ email address or C<undef> if unsuccessful. Without an argument, the
+ current email address is returned.
+
++=back
++
+ =cut
+
+ # set/return author email address
+@@ -394,6 +434,8 @@
+
+ =pod
+
++=over
++
+ =item real_user_name
+
+ $login = UR::Context::Process->real_user_name;
+@@ -401,6 +443,8 @@
+ This method is used to get the login name of the effective user id of
+ the running script.
+
++=back
++
+ =cut
+
+ # return the name of the user running the program
+@@ -425,6 +469,8 @@
+
+ =pod
+
++=over
++
+ =item fork
+ $pid = UR::Context::Process->fork;
+
+@@ -433,6 +479,9 @@
+ Handles properly disconnecting database handles if necessary so that data sources in children
+ are still valid. Also ensures that the active UR::Context::process has the child's PID
+ recorded within.
++
++=back
++
+ =cut
+
+ sub fork
+@@ -469,6 +518,8 @@
+
+ =pod
+
++=over
++
+ =item effective_user_name
+
+ $login = UR::Context::Process->effective_user_name;
+@@ -476,6 +527,8 @@
+ This method is used to get the login name of the effective user id of
+ the running script.
+
++=back
++
+ =cut
+
+ # return the name of the user running the program
+@@ -493,6 +546,8 @@
+
+ =pod
+
++=over
++
+ =item original_program_path
+
+ $path = UR::Context::Process->original_program_path;
+@@ -502,6 +557,8 @@
+ (In truth it will find the path at the time UR::Context::Process was used. So, a chdir
+ before that happens will cause incorrect results; in that case, undef will be returned.
+
++=back
++
+ =cut
+
+ our ($original_program_name, $original_program_dir);
+@@ -540,7 +597,6 @@
+
+ =pod
+
+-=back
+
+ =head1 SEE ALSO
+
+--- a/lib/UR/Object/Type/Initializer.pod
++++ b/lib/UR/Object/Type/Initializer.pod
+@@ -282,6 +282,8 @@
+ Works like 'sub_classification_method_name', except that the value of the
+ property is directly used to subclass the loaded object.
+
++=back
++
+ =head2 Properties properties
+
+ C<ur show properties UR::Object::Property> will print out an exhaustive list of all
+@@ -351,8 +353,12 @@
+
+ Indicates that this property can hold the value undef.
+
++=back
++
+ =head3 Calculated Properties
+
++=over
++
+ =item is_calculated
+
+ A flag indicating that the value of this property is determined from a
diff --git a/debian/patches/series b/debian/patches/series
index 750816f..40495e2 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
+fix_pod2man_errors
fix_man_spelling_errors
remove_failing_tests
--
Package UR for Debian
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