[liggghts] branch jessie-backports updated (760cee0 -> 10e9002)
Anton Gladky
gladk at moszumanska.debian.org
Sun Mar 19 10:53:44 UTC 2017
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch jessie-backports
in repository liggghts.
from 760cee0 Merge tag 'upstream/3.4.0+repack1' into jessie-backports
adds 001d810 Merge branch 'upstream'
adds 157da23 Refresh patches.
adds 9a184e0 Apply cme fix dpkg.
adds ea651a2 Update d/copyright.
adds 573aeaf Refresh patch.
adds 5a30eaa Update changelog.
adds ead3d70 Disable mpi-test on powerpc.
adds 3f3e411 Update changelog.
adds 6492a8e Apply cme fix dpkg.
adds f0905ad Update changelog.
adds 784df99 New upstream version 3.5.0+repack1
adds b0943f5 Merge tag 'upstream/3.5.0+repack1'
adds 4101537 Refresh patches.
adds d46723d Update changelog.
adds 8031b0e Do not use parallel build. Fails on some platforms.
adds 6a2a7ed Fix autotests.
adds 9054f28 Update changelog.
adds 12faa0f Update d/rules mode file.
adds 515f48c Restrictions: allow-stderr on the tests
adds 4e7e992 Update autopkgtests with examples from 3.5.0
adds 2decfde Use --parallel build again.
adds eceb267 Update changelog.
adds fe1b4d7 Replace OMPI_MCA_orte_rsh_agent by OMPI_MCA_plm_rsh_agent for autopkgtests too
adds 5037eeb Allow --oversubscribe for autopkgtests
adds ca595f6 Update changelog.
adds 96fa01f Add mips64el to disable_auto_test_archs_mpi in d/rules.
adds 9d9b545 Update changelog.
adds 6079250 Disable test on mips64el (unstable).
adds 3361f5b Update changelog.
adds 2219bae Fix variable name in d/rules.
adds abe0091 Update changelog.
adds a879ac6 Do not fail on mpi-errors. (Closes: #851726)
adds 8221d4c Update changelog.
adds e2a6253 Better fix for the bug, fixed in previous upload. (Thanks, Graham)
adds c7bff95 Update changelog.
new 4e802d3 Merge branch 'master' into jessie-backports
new 741fcdf Remove oversubscribe-parameter from mpirun.
new b777f71 Update changelog.
new 5f5126f Remove vtkIOParallelXML from cmake.
new 10e9002 Update changelog.
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/changelog | 91 +++
debian/control | 4 +-
debian/copyright | 4 +-
debian/patches/01_add_cmake_files.patch | 14 +-
debian/patches/05_vtk6_support.patch | 6 +-
.../b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch | 16 +
debian/patches/series | 1 +
debian/rules | 6 +-
debian/tests/control | 1 +
debian/tests/heat | 13 +-
debian/tests/packing | 14 +-
doc/Makefile | 177 +++++
doc/Manual.pdf | Bin 3387108 -> 3368441 bytes
doc/Section_commands.html | 31 +-
doc/Section_commands.txt | 5 +
doc/Section_gran_models.html | 40 ++
doc/Section_gran_models.txt | 40 ++
doc/atom_style.html | 9 +-
doc/atom_style.txt | 9 +-
doc/compute_pair_gran_local.html | 16 +-
doc/compute_pair_gran_local.txt | 16 +-
doc/conf.py | 260 +++++++
doc/fix_ave_correlate.html | 2 +-
doc/fix_ave_correlate.txt | 2 +-
doc/fix_ave_histo.html | 2 +-
doc/fix_ave_histo.txt | 2 +-
doc/fix_ave_time.html | 4 +-
doc/fix_ave_time.txt | 4 +-
doc/fix_box_relax.html | 7 +-
doc/fix_box_relax.txt | 7 +-
doc/fix_check_timestep_gran.html | 26 +-
doc/fix_check_timestep_gran.txt | 21 +-
doc/fix_continuum_weighted.html | 151 ++++
doc/fix_continuum_weighted.txt | 133 ++++
doc/fix_deform.html | 2 +
doc/fix_deform.txt | 2 +
doc/fix_heat_gran_conduction.html | 2 +-
doc/fix_heat_gran_conduction.txt | 2 +-
doc/fix_insert_pack.html | 8 +-
doc/fix_insert_pack.txt | 8 +-
doc/fix_insert_rate_region.html | 8 +-
doc/fix_insert_rate_region.txt | 8 +-
doc/fix_insert_stream.html | 8 +-
doc/fix_insert_stream.txt | 8 +-
doc/fix_massflow_mesh_sieve.html | 81 +++
doc/fix_massflow_mesh_sieve.txt | 68 ++
doc/fix_mesh_surface_stress.html | 3 +-
doc/fix_mesh_surface_stress.txt | 3 +-
doc/fix_move_mesh.html | 2 +
doc/fix_move_mesh.txt | 2 +
doc/fix_multicontact_halfspace.html | 89 +++
doc/fix_multicontact_halfspace.txt | 72 ++
doc/fix_multisphere.html | 6 +-
doc/fix_multisphere.txt | 4 +-
doc/fix_multisphere_break.html | 60 ++
doc/fix_multisphere_break.txt | 54 ++
doc/fix_wall_gran.html | 17 +-
doc/fix_wall_gran.txt | 16 +-
doc/gran_cohesion_easo_capillary_viscous.html | 2 +-
doc/gran_cohesion_easo_capillary_viscous.txt | 2 +-
doc/gran_cohesion_sjkr.html | 2 +-
doc/gran_cohesion_sjkr.txt | 2 +-
doc/gran_cohesion_sjkr2.html | 5 +-
doc/gran_cohesion_sjkr2.txt | 3 +-
doc/gran_cohesion_washino_capillary_viscous.html | 4 +-
doc/gran_cohesion_washino_capillary_viscous.txt | 4 +-
doc/gran_model_hertz.html | 9 +-
doc/gran_model_hertz.txt | 7 +-
doc/gran_model_hertz_stiffness.html | 4 +-
doc/gran_model_hertz_stiffness.txt | 4 +-
doc/gran_model_hooke.html | 6 +-
doc/gran_model_hooke.txt | 6 +-
doc/gran_model_hooke_stiffness.html | 4 +-
doc/gran_model_hooke_stiffness.txt | 4 +-
doc/gran_rolling_friction_cdt.html | 2 +-
doc/gran_rolling_friction_cdt.txt | 2 +-
doc/gran_rolling_friction_epsd.html | 2 +-
doc/gran_rolling_friction_epsd.txt | 2 +-
doc/gran_rolling_friction_epsd2.html | 2 +-
doc/gran_rolling_friction_epsd2.txt | 2 +-
doc/gran_rolling_friction_epsd3.html | 2 +-
doc/gran_rolling_friction_epsd3.txt | 2 +-
doc/gran_surface_multicontact.html | 31 +
doc/gran_surface_multicontact.txt | 27 +
doc/gran_surface_sphere.html | 2 +-
doc/gran_surface_sphere.txt | 2 +-
doc/gran_tangential_history.html | 2 +-
doc/gran_tangential_history.txt | 2 +-
doc/gran_tangential_no_history.html | 2 +-
doc/gran_tangential_no_history.txt | 2 +-
doc/info.html | 91 +++
doc/info.txt | 86 +++
doc/make.bat | 242 +++++++
doc/neigh_modify.html | 22 +-
doc/neigh_modify.txt | 22 +-
doc/read_data.html | 1 +
doc/read_data.txt | 1 +
.../ParScale/heatTransferBed_paScal/in.liggghts | 9 +-
.../Tutorials_public/chute_wear/in.chute_wear | 9 +-
.../LIGGGHTS/Tutorials_public/cohesion/in.cohesion | 7 +-
.../Tutorials_public/cohesion/in.noCohesion | 7 +-
.../Tutorials_public/contactModels/in.newModels | 7 +-
.../Tutorials_public/contactModels/in.oldModels | 1 -
.../LIGGGHTS/Tutorials_public/conveyor/in.conveyor | 11 +-
.../Tutorials_public/heatTransfer_1/in.heatGran | 7 +-
.../Tutorials_public/heatTransfer_2/in.heatGran | 7 +-
.../Tutorials_public/hysteresis/in.hysteresis | 7 +-
.../Tutorials_public/hysteresis/in.noHysteresis | 7 +-
.../insert_stream/in.insert_stream | 10 +-
.../insert_stream/in.insert_stream_reset_timestep | 9 +-
.../LIGGGHTS/Tutorials_public/meshGran/in.meshGran | 7 +-
.../LIGGGHTS/Tutorials_public/mesh_tet/in.mesh_tet | 1 -
.../movingMeshGran/in.movingMeshGran | 7 +-
.../multisphere_stone_restitution/in.multisphere | 7 +-
.../LIGGGHTS/Tutorials_public/packing/in.packing | 9 +-
examples/LIGGGHTS/Tutorials_public/sph_1/in.sph_1 | 1 -
examples/LIGGGHTS/Tutorials_public/sph_2/in.sph_2 | 1 -
src/ASPHERE/compute_erotate_asphere.cpp | 2 +-
src/ASPHERE/fix_nve_asphere.cpp | 6 +-
src/ASPHERE/fix_nve_asphere_noforce.cpp | 6 +-
src/ASPHERE/fix_nve_line.cpp | 6 +-
src/ASPHERE/pair_line_lj.cpp | 8 +-
...tu_15p10_vtk => Makefile.ubuntu_convex_vtk5p10} | 26 +-
src/MOLECULE/atom_vec_bond.cpp | 2 +-
src/MOLECULE/atom_vec_full.cpp | 2 +-
src/MOLECULE/atom_vec_molecular.cpp | 2 +-
src/MOLECULE/bond_harmonic.cpp | 4 +-
src/MOLECULE/bond_harmonic.h | 2 +-
src/Make.sh | 14 +-
src/PASCAL/fix_pascal_couple.cpp | 10 +-
src/POEMS/fix_poems.cpp | 10 +-
src/RIGID/fix_rigid.cpp | 8 +-
src/STUBS/mpi.h | 2 +-
src/VORONOI/compute_voronoi_atom.cpp | 6 +-
src/WINDOWS/extra/inttypes.h | 2 +-
src/angle.cpp | 2 +-
src/angle.h | 2 +-
src/angle_hybrid.cpp | 4 +-
src/angle_hybrid.h | 2 +-
src/atom.cpp | 30 +-
src/atom.h | 3 +
src/atom_map.cpp | 2 +-
src/atom_vec.cpp | 2 +-
src/atom_vec.h | 2 +-
src/atom_vec_atomic.cpp | 2 +-
src/atom_vec_charge.cpp | 2 +-
src/atom_vec_ellipsoid.cpp | 2 +-
src/atom_vec_hybrid.cpp | 4 +-
src/atom_vec_hybrid.h | 2 +-
src/atom_vec_line.cpp | 6 +-
src/atom_vec_sph.cpp | 6 +-
src/atom_vec_sph_var.cpp | 6 +-
src/atom_vec_sphere.cpp | 6 +-
src/bond.cpp | 2 +-
src/bond.h | 2 +-
src/bond_hybrid.cpp | 4 +-
src/bond_hybrid.h | 2 +-
src/cfd_datacoupling.cpp | 6 +-
src/cfd_datacoupling_file.cpp | 6 +-
src/cfd_datacoupling_mpi.cpp | 6 +-
src/cfd_datacoupling_mpi.h | 15 +-
src/cfd_regionmodel_none.cpp | 6 +-
src/change_box.cpp | 8 +-
src/citeme.h | 2 +-
src/cohesion_model_easo_capillary_viscous.h | 43 +-
src/cohesion_model_sjkr.h | 4 +-
src/cohesion_model_sjkr2.h | 4 +-
src/cohesion_model_washino_capillary_viscous.h | 43 +-
src/comm.cpp | 10 +-
src/compute.cpp | 7 +-
src/compute_atom_molecule.cpp | 4 +-
src/compute_bond_local.cpp | 4 +-
src/compute_centro_atom.cpp | 4 +-
src/compute_cluster_atom.cpp | 6 +-
src/compute_cna_atom.cpp | 6 +-
src/compute_contact_atom.cpp | 6 +-
src/compute_coord_atom.cpp | 9 +-
src/compute_displace_atom.cpp | 4 +-
src/compute_erotate_multisphere.cpp | 4 +-
src/compute_erotate_sphere.cpp | 2 +-
src/compute_erotate_sphere_atom.cpp | 2 +-
src/compute_group_group.cpp | 6 +-
src/compute_gyration.cpp | 2 +-
src/compute_gyration_molecule.cpp | 4 +-
src/compute_inertia_molecule.cpp | 6 +-
src/compute_ke.cpp | 2 +-
src/compute_ke_atom.cpp | 2 +-
src/compute_ke_multisphere.cpp | 4 +-
src/compute_msd.cpp | 2 +-
src/compute_nparticles_tracer_region.cpp | 4 +-
src/compute_pair_gran_local.cpp | 154 +++-
src/compute_pair_gran_local.h | 20 +-
src/compute_pe.cpp | 4 +-
src/compute_pe_atom.cpp | 2 +-
src/compute_pressure.cpp | 6 +-
src/compute_property_atom.cpp | 4 +-
src/compute_property_local.cpp | 2 +-
src/compute_property_molecule.cpp | 2 +-
src/compute_rdf.cpp | 6 +-
src/compute_rdf.h | 2 +-
src/compute_reduce.cpp | 6 +-
src/compute_reduce_region.cpp | 4 +-
src/compute_rigid.cpp | 4 +-
src/compute_slice.cpp | 4 +-
src/compute_stress_atom.cpp | 4 +-
src/compute_surface.cpp | 6 +-
src/compute_temp.cpp | 4 +-
src/contact_interface.h | 83 ++-
src/contact_models.cpp | 53 +-
src/contact_models.h | 98 ++-
src/container_base.cpp | 3 +-
src/container_base.h | 56 +-
src/container_base_I.h | 53 +-
src/create_atoms.cpp | 6 +-
src/create_box.cpp | 4 +-
src/custom_value_tracker.cpp | 9 -
src/custom_value_tracker.h | 5 +-
src/debug_liggghts.h | 4 +-
src/delete_atoms.cpp | 4 +-
src/delete_bonds.cpp | 6 +-
src/dihedral.cpp | 2 +-
src/dihedral.h | 2 +-
src/dihedral_hybrid.cpp | 4 +-
src/dihedral_hybrid.h | 2 +-
src/displace_atoms.cpp | 6 +-
src/domain.cpp | 10 +-
src/domain.h | 3 +-
src/domain_I.h | 38 +-
src/dump.cpp | 8 +-
src/dump.h | 4 +-
src/dump_atom_vtk.cpp | 2 +-
src/dump_custom.cpp | 6 +-
src/dump_custom_vtk.cpp | 190 ++++-
src/dump_custom_vtk.h | 12 +
src/dump_decomposition_vtk.cpp | 2 +-
src/dump_euler_vtk.cpp | 2 +-
src/dump_image.cpp | 6 +-
src/dump_local.cpp | 6 +-
src/dump_local_gran_vtk.cpp | 53 +-
src/dump_local_gran_vtk.h | 2 +
src/dump_mesh_stl.cpp | 2 +-
src/dump_mesh_vtk.cpp | 16 +-
src/dump_mesh_vtk.h | 2 +
src/dump_movie.cpp | 6 +-
src/dump_xyz.cpp | 2 +-
src/error.cpp | 27 +-
src/error.h | 1 +
src/finish.cpp | 8 +-
src/fix.cpp | 2 +-
src/fix_adapt.cpp | 6 +-
src/fix_addforce.cpp | 4 +-
src/fix_ave_atom.cpp | 4 +-
src/fix_ave_atom.h | 2 +-
src/fix_ave_correlate.cpp | 4 +-
src/fix_ave_correlate.h | 2 +-
src/fix_ave_euler.cpp | 6 +-
src/fix_ave_euler.h | 2 +-
src/fix_ave_histo.cpp | 4 +-
src/fix_ave_histo.h | 2 +-
src/fix_ave_spatial.cpp | 4 +-
src/fix_ave_spatial.h | 2 +-
src/fix_ave_time.cpp | 4 +-
src/fix_ave_time.h | 2 +-
src/fix_aveforce.cpp | 6 +-
src/fix_base_liggghts.cpp | 6 +-
src/fix_box_relax.cpp | 6 +-
src/fix_buoyancy.cpp | 6 +-
src/fix_cfd_coupling.cpp | 6 +-
src/fix_cfd_coupling_convection.cpp | 6 +-
src/fix_cfd_coupling_convection_impl.cpp | 6 +-
src/fix_cfd_coupling_convection_species.cpp | 6 +-
src/fix_cfd_coupling_force.cpp | 6 +-
src/fix_cfd_coupling_force_implicit.cpp | 6 +-
src/fix_cfd_coupling_force_implicit.h | 2 +-
src/fix_check_timestep_gran.cpp | 128 +++-
src/fix_check_timestep_gran.h | 5 +-
src/fix_check_timestep_sph.cpp | 6 +-
src/fix_contact_history.cpp | 34 +-
src/fix_contact_history_mesh.cpp | 6 +-
src/fix_contact_history_mesh.h | 21 +-
src/fix_contact_history_mesh_I.h | 16 +-
src/fix_contact_property_atom.cpp | 461 ++++++++++++
src/fix_contact_property_atom.h | 144 +++-
src/fix_contact_property_atom_dummy.h | 65 --
src/fix_contact_property_atom_wall.cpp | 157 +++++
src/fix_contact_property_atom_wall.h | 78 +-
src/fix_continuum_weighted.cpp | 781 +++++++++++++++++++++
..._gran_conduction.h => fix_continuum_weighted.h} | 78 +-
src/fix_deform.cpp | 9 +-
src/fix_deform_check.cpp | 6 +-
src/fix_drag.cpp | 6 +-
src/fix_dt_reset.cpp | 6 +-
src/fix_efield.cpp | 6 +-
src/fix_enforce2d.cpp | 2 +-
src/fix_external.cpp | 6 +-
src/fix_fiber_spring_simple.cpp | 6 +-
src/fix_freeze.cpp | 2 +-
src/fix_gravity.cpp | 19 +-
src/fix_gravity.h | 1 +
src/fix_heat_gran.cpp | 11 +-
src/fix_heat_gran.h | 4 +
src/fix_insert.cpp | 57 +-
src/fix_insert.h | 2 +
src/fix_insert_pack.cpp | 22 +-
src/fix_insert_rate_region.cpp | 6 +-
src/fix_insert_stream.cpp | 35 +-
src/fix_lineforce.cpp | 6 +-
src/fix_massflow_mesh.cpp | 22 +-
src/fix_massflow_mesh.h | 14 +-
src/fix_massflow_mesh_sieve.cpp | 306 ++++++++
src/{fix_wall_sph.h => fix_massflow_mesh_sieve.h} | 55 +-
src/fix_mesh.cpp | 34 +-
src/fix_mesh.h | 7 +-
src/fix_mesh_surface.cpp | 98 ++-
src/fix_mesh_surface.h | 27 +-
src/fix_mesh_surface_stress.cpp | 21 +-
src/fix_mesh_surface_stress.h | 4 +
src/fix_mesh_surface_stress_servo.h | 2 +-
src/fix_minimize.cpp | 2 +-
src/fix_momentum.cpp | 4 +-
src/fix_move.cpp | 6 +-
src/fix_move.h | 2 +-
src/fix_move_mesh.h | 3 +
src/fix_multicontact_halfspace.cpp | 480 +++++++++++++
...stress_servo.h => fix_multicontact_halfspace.h} | 146 ++--
src/fix_multisphere.cpp | 101 ++-
src/fix_multisphere.h | 11 +-
src/fix_multisphere_break.cpp | 324 +++++++++
src/{fix_diam_max.h => fix_multisphere_break.h} | 42 +-
src/fix_multisphere_comm.cpp | 670 ++++++++++++++++++
src/fix_multisphere_comm_I.h | 84 ++-
src/fix_neighlist_mesh.cpp | 5 +-
src/fix_nve.cpp | 4 +-
src/fix_nve_limit.cpp | 8 +-
src/fix_nve_noforce.cpp | 4 +-
src/fix_nve_sph.cpp | 4 +-
src/fix_nve_sph_stationary.cpp | 4 +-
src/fix_nve_sphere.cpp | 6 +-
src/fix_particledistribution_discrete.cpp | 8 +-
src/fix_particledistribution_discrete.h | 5 +
src/fix_planeforce.cpp | 6 +-
src/fix_print.cpp | 4 +-
src/fix_print.h | 2 +-
src/fix_property_atom.cpp | 9 +-
src/fix_property_atom.h | 12 +
src/fix_property_atom_timetracer.cpp | 28 +-
src/fix_property_atom_tracer.cpp | 6 +-
src/fix_property_atom_tracer_stream.cpp | 15 +-
src/fix_property_global.cpp | 6 +-
src/fix_read_restart.cpp | 2 +-
src/fix_region_variable.cpp | 8 +-
src/fix_relax_contacts.h | 2 +
src/fix_respa.cpp | 2 +-
src/fix_rigid.cpp | 8 +-
src/fix_scalar_transport_equation.cpp | 11 +-
src/fix_setforce.cpp | 4 +-
src/fix_sph.cpp | 8 +-
src/fix_sph_density_continuity.cpp | 8 +-
src/fix_sph_density_corr.cpp | 8 +-
src/fix_sph_density_summation.cpp | 8 +-
src/fix_sph_pressure.cpp | 8 +-
src/fix_spring.cpp | 6 +-
src/fix_spring_rg.cpp | 6 +-
src/fix_spring_self.cpp | 4 +-
src/fix_store.cpp | 4 +-
src/fix_store_force.cpp | 2 +-
src/fix_store_state.cpp | 4 +-
src/fix_template_multiplespheres.cpp | 10 +-
src/fix_template_multisphere.cpp | 11 +-
src/fix_template_sphere.cpp | 8 +-
src/fix_template_sphere.h | 7 +
src/fix_viscous.cpp | 6 +-
src/fix_wall.cpp | 6 +-
src/fix_wall_gran.cpp | 218 +++++-
src/fix_wall_gran.h | 50 +-
src/fix_wall_gran_base.h | 62 +-
src/fix_wall_region.cpp | 6 +-
src/fix_wall_region_sph.cpp | 6 +-
src/fix_wall_sph.cpp | 6 +-
src/force.cpp | 4 +-
src/general_container.h | 1 +
src/general_container_I.h | 26 +-
src/global_properties.cpp | 51 +-
src/global_properties.h | 6 +
src/granular_pair_style.h | 3 +-
src/granular_styles.cpp | 11 +-
src/granular_wall.h | 4 +
src/group.cpp | 18 +-
src/group.h | 2 +-
src/image.cpp | 8 +-
src/image.h | 4 +-
src/improper.cpp | 2 +-
src/improper.h | 2 +-
src/improper_hybrid.cpp | 4 +-
src/improper_hybrid.h | 2 +-
src/input.cpp | 10 +-
src/input.h | 8 +-
src/input_mesh_tet.cpp | 58 +-
src/input_mesh_tet.h | 2 +-
src/input_mesh_tri.cpp | 95 ++-
src/input_mesh_tri.h | 6 +-
src/input_multisphere.cpp | 17 +-
src/input_multisphere.h | 2 +-
src/integrate.cpp | 2 +-
src/irregular.cpp | 6 +-
src/kspace.cpp | 4 +-
src/lammps.cpp | 10 +-
src/lammps.h | 2 +-
src/lattice.cpp | 6 +-
src/library.cpp | 6 +-
src/library.h | 2 +-
src/library_cfd_coupling.cpp | 4 +-
src/library_cfd_coupling.h | 2 +-
src/lmptype.h | 2 +-
src/lmpwindows.h | 4 +-
src/main.cpp | 4 +-
src/math_extra.cpp | 4 +-
src/math_extra.h | 6 +-
src/math_extra_liggghts.h | 43 +-
src/math_vector.h | 4 +-
src/memory.cpp | 6 +-
src/memory_ns.h | 2 +-
src/mesh_mover.cpp | 2 +-
src/min.cpp | 6 +-
src/min_cg.cpp | 6 +-
src/min_linesearch.cpp | 2 +-
src/minimize.cpp | 2 +-
src/modify.cpp | 4 +-
src/modify.h | 5 +-
src/modify_liggghts.cpp | 43 +-
src/mpi_liggghts.h | 11 +-
src/multi_node_mesh.h | 3 +
src/multi_node_mesh_I.h | 49 +-
src/multi_node_mesh_parallel_I.h | 34 +-
src/multisphere.cpp | 21 +-
src/multisphere.h | 12 +
src/multisphere_parallel.cpp | 307 ++++++++
src/multisphere_parallel.h | 83 +++
...egion_mesh_tet_I.h => multisphere_parallel_I.h} | 76 +-
src/my_page.h | 2 +-
src/my_pool_chunk.h | 2 +-
src/neighbor.cpp | 9 +-
src/nonspherical_flags.h | 18 +
src/normal_model_hertz.h | 17 +-
src/normal_model_hertz_stiffness.h | 14 +-
src/normal_model_hooke.h | 14 +-
src/normal_model_hooke_hysteresis.h | 16 +-
src/normal_model_hooke_stiffness.h | 10 +-
src/output.cpp | 15 +-
src/pair.cpp | 10 +-
src/pair_gran.cpp | 85 ++-
src/pair_gran.h | 81 ++-
src/pair_gran_base.h | 110 ++-
src/pair_gran_proxy.cpp | 8 +-
src/pair_gran_proxy.h | 3 +-
src/pair_hybrid.cpp | 6 +-
src/pair_hybrid.h | 2 +-
src/pair_hybrid_overlay.cpp | 4 +-
src/pair_soft.cpp | 8 +-
src/pair_sph.cpp | 8 +-
src/pair_sph_artvisc_tenscorr.cpp | 8 +-
src/particleToInsert.cpp | 2 +-
src/particleToInsert_multisphere.cpp | 4 +-
src/pointers.h | 2 +-
src/primitive_wall.h | 2 +-
src/probability_distribution.h | 6 +-
src/properties.cpp | 6 +-
src/{rotate.cpp => random.cpp} | 44 +-
...contact_property_atom_wall_dummy.h => random.h} | 14 +-
src/random_mars.cpp | 4 +-
src/random_mars.h | 4 +-
src/random_park.cpp | 4 +-
src/random_park.h | 4 +-
src/read_data.cpp | 10 +-
src/read_data.h | 2 +-
src/read_dump.cpp | 6 +-
src/read_dump.h | 2 +-
src/read_restart.cpp | 6 +-
src/read_restart.h | 2 +-
src/reader.cpp | 4 +-
src/reader_native.cpp | 4 +-
src/reader_xyz.cpp | 4 +-
src/region.cpp | 6 +-
src/region_block.cpp | 4 +-
src/region_cone.cpp | 6 +-
src/region_cylinder.cpp | 6 +-
src/region_intersect.cpp | 4 +-
src/region_mesh_tet.cpp | 21 +-
src/region_neighbor_list.h | 8 +-
src/region_neighbor_list_I.h | 29 +-
src/region_neighbor_list_definitions.h | 16 +-
src/region_plane.cpp | 6 +-
src/region_prism.cpp | 6 +-
src/region_sphere.cpp | 6 +-
src/region_union.cpp | 4 +-
src/region_wedge.cpp | 6 +-
src/replicate.cpp | 4 +-
src/respa.cpp | 4 +-
src/rolling_model_cdt.h | 4 +-
src/rolling_model_epsd.h | 16 +-
src/rolling_model_epsd2.h | 4 +-
src/rolling_model_epsd3.h | 2 +-
src/rotate.cpp | 4 +-
src/run.cpp | 4 +-
src/set.cpp | 32 +-
src/special.cpp | 4 +-
src/style_contact_model.h | 375 ++++++++++
src/style_fix.h | 6 +
src/style_surface_model.h | 1 +
src/superquadric_flag.h | 7 +-
src/surface_mesh.h | 16 +-
src/surface_mesh_I.h | 2 +-
src/surface_model_default.h | 5 +-
src/surface_model_multicontact.h | 210 ++++++
src/tangential_model_history.h | 32 +-
src/tangential_model_no_history.h | 30 +-
src/thermo.cpp | 40 +-
src/thermo.h | 10 +-
src/timer.cpp | 2 +-
src/tri_mesh.h | 18 +-
src/tri_mesh_I.h | 34 +-
src/universe.cpp | 8 +-
src/universe.h | 2 +-
src/update.cpp | 4 +-
src/utils.h | 4 +-
src/variable.cpp | 6 +-
src/variable.h | 2 +-
src/vector_liggghts.h | 10 +-
src/velocity.cpp | 113 +--
src/velocity.h | 2 +-
src/verlet.cpp | 2 +-
src/version_liggghts.h | 2 +-
src/version_liggghts.txt | 2 +-
src/write_data.cpp | 4 +-
src/write_data.h | 2 +-
src/write_dump.cpp | 2 +-
src/write_restart.cpp | 4 +-
src/write_restart.h | 2 +-
538 files changed, 10091 insertions(+), 2110 deletions(-)
create mode 100644 debian/patches/b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch
create mode 100644 doc/Makefile
create mode 100644 doc/conf.py
create mode 100644 doc/fix_continuum_weighted.html
create mode 100644 doc/fix_continuum_weighted.txt
create mode 100644 doc/fix_massflow_mesh_sieve.html
create mode 100644 doc/fix_massflow_mesh_sieve.txt
create mode 100644 doc/fix_multicontact_halfspace.html
create mode 100644 doc/fix_multicontact_halfspace.txt
create mode 100644 doc/fix_multisphere_break.html
create mode 100644 doc/fix_multisphere_break.txt
create mode 100644 doc/gran_surface_multicontact.html
create mode 100644 doc/gran_surface_multicontact.txt
create mode 100644 doc/info.html
create mode 100644 doc/info.txt
create mode 100644 doc/make.bat
copy src/MAKE/{Makefile.ubuntu_15p10_vtk => Makefile.ubuntu_convex_vtk5p10} (76%)
create mode 100644 src/fix_contact_property_atom.cpp
delete mode 100644 src/fix_contact_property_atom_dummy.h
create mode 100644 src/fix_contact_property_atom_wall.cpp
create mode 100644 src/fix_continuum_weighted.cpp
copy src/{fix_heat_gran_conduction.h => fix_continuum_weighted.h} (60%)
create mode 100644 src/fix_massflow_mesh_sieve.cpp
copy src/{fix_wall_sph.h => fix_massflow_mesh_sieve.h} (74%)
create mode 100644 src/fix_multicontact_halfspace.cpp
copy src/{fix_mesh_surface_stress_servo.h => fix_multicontact_halfspace.h} (50%)
create mode 100644 src/fix_multisphere_break.cpp
copy src/{fix_diam_max.h => fix_multisphere_break.h} (78%)
create mode 100644 src/fix_multisphere_comm.cpp
create mode 100644 src/fix_relax_contacts.h
create mode 100644 src/multisphere_parallel.cpp
copy src/{region_mesh_tet_I.h => multisphere_parallel_I.h} (73%)
create mode 100644 src/nonspherical_flags.h
copy src/{rotate.cpp => random.cpp} (70%)
rename src/{fix_contact_property_atom_wall_dummy.h => random.h} (89%)
create mode 100644 src/surface_model_multicontact.h
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/liggghts.git
More information about the debian-science-commits
mailing list