[liggghts] 01/05: Merge branch 'master' into jessie-backports
Anton Gladky
gladk at moszumanska.debian.org
Sun Mar 19 10:53:44 UTC 2017
This is an automated email from the git hooks/post-receive script.
gladk pushed a commit to branch jessie-backports
in repository liggghts.
commit 4e802d30da1412b018fd50c720eb0ebbddbe8fad
Merge: 760cee0 c7bff95
Author: Anton Gladky <gladk at debian.org>
Date: Sun Mar 19 09:37:32 2017 +0100
Merge branch 'master' into jessie-backports
debian/changelog | 82 +++
debian/control | 4 +-
debian/copyright | 4 +-
debian/patches/01_add_cmake_files.patch | 14 +-
debian/patches/05_vtk6_support.patch | 6 +-
.../b7cc08a225cb25b5b5db3b2bd5e9728fc1f3a127.patch | 16 +
debian/patches/series | 1 +
debian/rules | 8 +-
debian/tests/control | 1 +
debian/tests/heat | 13 +-
debian/tests/packing | 14 +-
doc/Makefile | 177 +++++
doc/Manual.pdf | Bin 3387108 -> 3368441 bytes
doc/Section_commands.html | 31 +-
doc/Section_commands.txt | 5 +
doc/Section_gran_models.html | 40 ++
doc/Section_gran_models.txt | 40 ++
doc/atom_style.html | 9 +-
doc/atom_style.txt | 9 +-
doc/compute_pair_gran_local.html | 16 +-
doc/compute_pair_gran_local.txt | 16 +-
doc/conf.py | 260 +++++++
doc/fix_ave_correlate.html | 2 +-
doc/fix_ave_correlate.txt | 2 +-
doc/fix_ave_histo.html | 2 +-
doc/fix_ave_histo.txt | 2 +-
doc/fix_ave_time.html | 4 +-
doc/fix_ave_time.txt | 4 +-
doc/fix_box_relax.html | 7 +-
doc/fix_box_relax.txt | 7 +-
doc/fix_check_timestep_gran.html | 26 +-
doc/fix_check_timestep_gran.txt | 21 +-
doc/fix_continuum_weighted.html | 151 ++++
doc/fix_continuum_weighted.txt | 133 ++++
doc/fix_deform.html | 2 +
doc/fix_deform.txt | 2 +
doc/fix_heat_gran_conduction.html | 2 +-
doc/fix_heat_gran_conduction.txt | 2 +-
doc/fix_insert_pack.html | 8 +-
doc/fix_insert_pack.txt | 8 +-
doc/fix_insert_rate_region.html | 8 +-
doc/fix_insert_rate_region.txt | 8 +-
doc/fix_insert_stream.html | 8 +-
doc/fix_insert_stream.txt | 8 +-
doc/fix_massflow_mesh_sieve.html | 81 +++
doc/fix_massflow_mesh_sieve.txt | 68 ++
doc/fix_mesh_surface_stress.html | 3 +-
doc/fix_mesh_surface_stress.txt | 3 +-
doc/fix_move_mesh.html | 2 +
doc/fix_move_mesh.txt | 2 +
doc/fix_multicontact_halfspace.html | 89 +++
doc/fix_multicontact_halfspace.txt | 72 ++
doc/fix_multisphere.html | 6 +-
doc/fix_multisphere.txt | 4 +-
doc/fix_multisphere_break.html | 60 ++
doc/fix_multisphere_break.txt | 54 ++
doc/fix_wall_gran.html | 17 +-
doc/fix_wall_gran.txt | 16 +-
doc/gran_cohesion_easo_capillary_viscous.html | 2 +-
doc/gran_cohesion_easo_capillary_viscous.txt | 2 +-
doc/gran_cohesion_sjkr.html | 2 +-
doc/gran_cohesion_sjkr.txt | 2 +-
doc/gran_cohesion_sjkr2.html | 5 +-
doc/gran_cohesion_sjkr2.txt | 3 +-
doc/gran_cohesion_washino_capillary_viscous.html | 4 +-
doc/gran_cohesion_washino_capillary_viscous.txt | 4 +-
doc/gran_model_hertz.html | 9 +-
doc/gran_model_hertz.txt | 7 +-
doc/gran_model_hertz_stiffness.html | 4 +-
doc/gran_model_hertz_stiffness.txt | 4 +-
doc/gran_model_hooke.html | 6 +-
doc/gran_model_hooke.txt | 6 +-
doc/gran_model_hooke_stiffness.html | 4 +-
doc/gran_model_hooke_stiffness.txt | 4 +-
doc/gran_rolling_friction_cdt.html | 2 +-
doc/gran_rolling_friction_cdt.txt | 2 +-
doc/gran_rolling_friction_epsd.html | 2 +-
doc/gran_rolling_friction_epsd.txt | 2 +-
doc/gran_rolling_friction_epsd2.html | 2 +-
doc/gran_rolling_friction_epsd2.txt | 2 +-
doc/gran_rolling_friction_epsd3.html | 2 +-
doc/gran_rolling_friction_epsd3.txt | 2 +-
doc/gran_surface_multicontact.html | 31 +
doc/gran_surface_multicontact.txt | 27 +
doc/gran_surface_sphere.html | 2 +-
doc/gran_surface_sphere.txt | 2 +-
doc/gran_tangential_history.html | 2 +-
doc/gran_tangential_history.txt | 2 +-
doc/gran_tangential_no_history.html | 2 +-
doc/gran_tangential_no_history.txt | 2 +-
doc/info.html | 91 +++
doc/info.txt | 86 +++
doc/make.bat | 242 +++++++
doc/neigh_modify.html | 22 +-
doc/neigh_modify.txt | 22 +-
doc/read_data.html | 1 +
doc/read_data.txt | 1 +
.../ParScale/heatTransferBed_paScal/in.liggghts | 9 +-
.../Tutorials_public/chute_wear/in.chute_wear | 9 +-
.../LIGGGHTS/Tutorials_public/cohesion/in.cohesion | 7 +-
.../Tutorials_public/cohesion/in.noCohesion | 7 +-
.../Tutorials_public/contactModels/in.newModels | 7 +-
.../Tutorials_public/contactModels/in.oldModels | 1 -
.../LIGGGHTS/Tutorials_public/conveyor/in.conveyor | 11 +-
.../Tutorials_public/heatTransfer_1/in.heatGran | 7 +-
.../Tutorials_public/heatTransfer_2/in.heatGran | 7 +-
.../Tutorials_public/hysteresis/in.hysteresis | 7 +-
.../Tutorials_public/hysteresis/in.noHysteresis | 7 +-
.../insert_stream/in.insert_stream | 10 +-
.../insert_stream/in.insert_stream_reset_timestep | 9 +-
.../LIGGGHTS/Tutorials_public/meshGran/in.meshGran | 7 +-
.../LIGGGHTS/Tutorials_public/mesh_tet/in.mesh_tet | 1 -
.../movingMeshGran/in.movingMeshGran | 7 +-
.../multisphere_stone_restitution/in.multisphere | 7 +-
.../LIGGGHTS/Tutorials_public/packing/in.packing | 9 +-
examples/LIGGGHTS/Tutorials_public/sph_1/in.sph_1 | 1 -
examples/LIGGGHTS/Tutorials_public/sph_2/in.sph_2 | 1 -
src/ASPHERE/compute_erotate_asphere.cpp | 2 +-
src/ASPHERE/fix_nve_asphere.cpp | 6 +-
src/ASPHERE/fix_nve_asphere_noforce.cpp | 6 +-
src/ASPHERE/fix_nve_line.cpp | 6 +-
src/ASPHERE/pair_line_lj.cpp | 8 +-
src/MAKE/Makefile.ubuntu_convex_vtk5p10 | 116 +++
src/MOLECULE/atom_vec_bond.cpp | 2 +-
src/MOLECULE/atom_vec_full.cpp | 2 +-
src/MOLECULE/atom_vec_molecular.cpp | 2 +-
src/MOLECULE/bond_harmonic.cpp | 4 +-
src/MOLECULE/bond_harmonic.h | 2 +-
src/Make.sh | 14 +-
src/PASCAL/fix_pascal_couple.cpp | 10 +-
src/POEMS/fix_poems.cpp | 10 +-
src/RIGID/fix_rigid.cpp | 8 +-
src/STUBS/mpi.h | 2 +-
src/VORONOI/compute_voronoi_atom.cpp | 6 +-
src/WINDOWS/extra/inttypes.h | 2 +-
src/angle.cpp | 2 +-
src/angle.h | 2 +-
src/angle_hybrid.cpp | 4 +-
src/angle_hybrid.h | 2 +-
src/atom.cpp | 30 +-
src/atom.h | 3 +
src/atom_map.cpp | 2 +-
src/atom_vec.cpp | 2 +-
src/atom_vec.h | 2 +-
src/atom_vec_atomic.cpp | 2 +-
src/atom_vec_charge.cpp | 2 +-
src/atom_vec_ellipsoid.cpp | 2 +-
src/atom_vec_hybrid.cpp | 4 +-
src/atom_vec_hybrid.h | 2 +-
src/atom_vec_line.cpp | 6 +-
src/atom_vec_sph.cpp | 6 +-
src/atom_vec_sph_var.cpp | 6 +-
src/atom_vec_sphere.cpp | 6 +-
src/bond.cpp | 2 +-
src/bond.h | 2 +-
src/bond_hybrid.cpp | 4 +-
src/bond_hybrid.h | 2 +-
src/cfd_datacoupling.cpp | 6 +-
src/cfd_datacoupling_file.cpp | 6 +-
src/cfd_datacoupling_mpi.cpp | 6 +-
src/cfd_datacoupling_mpi.h | 15 +-
src/cfd_regionmodel_none.cpp | 6 +-
src/change_box.cpp | 8 +-
src/citeme.h | 2 +-
src/cohesion_model_easo_capillary_viscous.h | 43 +-
src/cohesion_model_sjkr.h | 4 +-
src/cohesion_model_sjkr2.h | 4 +-
src/cohesion_model_washino_capillary_viscous.h | 43 +-
src/comm.cpp | 10 +-
src/compute.cpp | 7 +-
src/compute_atom_molecule.cpp | 4 +-
src/compute_bond_local.cpp | 4 +-
src/compute_centro_atom.cpp | 4 +-
src/compute_cluster_atom.cpp | 6 +-
src/compute_cna_atom.cpp | 6 +-
src/compute_contact_atom.cpp | 6 +-
src/compute_coord_atom.cpp | 9 +-
src/compute_displace_atom.cpp | 4 +-
src/compute_erotate_multisphere.cpp | 4 +-
src/compute_erotate_sphere.cpp | 2 +-
src/compute_erotate_sphere_atom.cpp | 2 +-
src/compute_group_group.cpp | 6 +-
src/compute_gyration.cpp | 2 +-
src/compute_gyration_molecule.cpp | 4 +-
src/compute_inertia_molecule.cpp | 6 +-
src/compute_ke.cpp | 2 +-
src/compute_ke_atom.cpp | 2 +-
src/compute_ke_multisphere.cpp | 4 +-
src/compute_msd.cpp | 2 +-
src/compute_nparticles_tracer_region.cpp | 4 +-
src/compute_pair_gran_local.cpp | 154 +++-
src/compute_pair_gran_local.h | 20 +-
src/compute_pe.cpp | 4 +-
src/compute_pe_atom.cpp | 2 +-
src/compute_pressure.cpp | 6 +-
src/compute_property_atom.cpp | 4 +-
src/compute_property_local.cpp | 2 +-
src/compute_property_molecule.cpp | 2 +-
src/compute_rdf.cpp | 6 +-
src/compute_rdf.h | 2 +-
src/compute_reduce.cpp | 6 +-
src/compute_reduce_region.cpp | 4 +-
src/compute_rigid.cpp | 4 +-
src/compute_slice.cpp | 4 +-
src/compute_stress_atom.cpp | 4 +-
src/compute_surface.cpp | 6 +-
src/compute_temp.cpp | 4 +-
src/contact_interface.h | 83 ++-
src/contact_models.cpp | 53 +-
src/contact_models.h | 98 ++-
src/container_base.cpp | 3 +-
src/container_base.h | 56 +-
src/container_base_I.h | 53 +-
src/create_atoms.cpp | 6 +-
src/create_box.cpp | 4 +-
src/custom_value_tracker.cpp | 9 -
src/custom_value_tracker.h | 5 +-
src/debug_liggghts.h | 4 +-
src/delete_atoms.cpp | 4 +-
src/delete_bonds.cpp | 6 +-
src/dihedral.cpp | 2 +-
src/dihedral.h | 2 +-
src/dihedral_hybrid.cpp | 4 +-
src/dihedral_hybrid.h | 2 +-
src/displace_atoms.cpp | 6 +-
src/domain.cpp | 10 +-
src/domain.h | 3 +-
src/domain_I.h | 38 +-
src/dump.cpp | 8 +-
src/dump.h | 4 +-
src/dump_atom_vtk.cpp | 2 +-
src/dump_custom.cpp | 6 +-
src/dump_custom_vtk.cpp | 190 ++++-
src/dump_custom_vtk.h | 12 +
src/dump_decomposition_vtk.cpp | 2 +-
src/dump_euler_vtk.cpp | 2 +-
src/dump_image.cpp | 6 +-
src/dump_local.cpp | 6 +-
src/dump_local_gran_vtk.cpp | 53 +-
src/dump_local_gran_vtk.h | 2 +
src/dump_mesh_stl.cpp | 2 +-
src/dump_mesh_vtk.cpp | 16 +-
src/dump_mesh_vtk.h | 2 +
src/dump_movie.cpp | 6 +-
src/dump_xyz.cpp | 2 +-
src/error.cpp | 27 +-
src/error.h | 1 +
src/finish.cpp | 8 +-
src/fix.cpp | 2 +-
src/fix_adapt.cpp | 6 +-
src/fix_addforce.cpp | 4 +-
src/fix_ave_atom.cpp | 4 +-
src/fix_ave_atom.h | 2 +-
src/fix_ave_correlate.cpp | 4 +-
src/fix_ave_correlate.h | 2 +-
src/fix_ave_euler.cpp | 6 +-
src/fix_ave_euler.h | 2 +-
src/fix_ave_histo.cpp | 4 +-
src/fix_ave_histo.h | 2 +-
src/fix_ave_spatial.cpp | 4 +-
src/fix_ave_spatial.h | 2 +-
src/fix_ave_time.cpp | 4 +-
src/fix_ave_time.h | 2 +-
src/fix_aveforce.cpp | 6 +-
src/fix_base_liggghts.cpp | 6 +-
src/fix_box_relax.cpp | 6 +-
src/fix_buoyancy.cpp | 6 +-
src/fix_cfd_coupling.cpp | 6 +-
src/fix_cfd_coupling_convection.cpp | 6 +-
src/fix_cfd_coupling_convection_impl.cpp | 6 +-
src/fix_cfd_coupling_convection_species.cpp | 6 +-
src/fix_cfd_coupling_force.cpp | 6 +-
src/fix_cfd_coupling_force_implicit.cpp | 6 +-
src/fix_cfd_coupling_force_implicit.h | 2 +-
src/fix_check_timestep_gran.cpp | 128 +++-
src/fix_check_timestep_gran.h | 5 +-
src/fix_check_timestep_sph.cpp | 6 +-
src/fix_contact_history.cpp | 34 +-
src/fix_contact_history_mesh.cpp | 6 +-
src/fix_contact_history_mesh.h | 21 +-
src/fix_contact_history_mesh_I.h | 16 +-
src/fix_contact_property_atom.cpp | 461 ++++++++++++
src/fix_contact_property_atom.h | 144 +++-
src/fix_contact_property_atom_wall.cpp | 157 +++++
src/fix_contact_property_atom_wall.h | 78 +-
src/fix_continuum_weighted.cpp | 781 +++++++++++++++++++++
src/{fix_print.h => fix_continuum_weighted.h} | 89 ++-
src/fix_deform.cpp | 9 +-
src/fix_deform_check.cpp | 6 +-
src/fix_drag.cpp | 6 +-
src/fix_dt_reset.cpp | 6 +-
src/fix_efield.cpp | 6 +-
src/fix_enforce2d.cpp | 2 +-
src/fix_external.cpp | 6 +-
src/fix_fiber_spring_simple.cpp | 6 +-
src/fix_freeze.cpp | 2 +-
src/fix_gravity.cpp | 19 +-
src/fix_gravity.h | 1 +
src/fix_heat_gran.cpp | 11 +-
src/fix_heat_gran.h | 4 +
src/fix_insert.cpp | 57 +-
src/fix_insert.h | 2 +
src/fix_insert_pack.cpp | 22 +-
src/fix_insert_rate_region.cpp | 6 +-
src/fix_insert_stream.cpp | 35 +-
src/fix_lineforce.cpp | 6 +-
src/fix_massflow_mesh.cpp | 22 +-
src/fix_massflow_mesh.h | 14 +-
src/fix_massflow_mesh_sieve.cpp | 306 ++++++++
...k_timestep_gran.h => fix_massflow_mesh_sieve.h} | 68 +-
src/fix_mesh.cpp | 34 +-
src/fix_mesh.h | 7 +-
src/fix_mesh_surface.cpp | 98 ++-
src/fix_mesh_surface.h | 27 +-
src/fix_mesh_surface_stress.cpp | 21 +-
src/fix_mesh_surface_stress.h | 4 +
src/fix_mesh_surface_stress_servo.h | 2 +-
src/fix_minimize.cpp | 2 +-
src/fix_momentum.cpp | 4 +-
src/fix_move.cpp | 6 +-
src/fix_move.h | 2 +-
src/fix_move_mesh.h | 3 +
src/fix_multicontact_halfspace.cpp | 480 +++++++++++++
...stress_servo.h => fix_multicontact_halfspace.h} | 146 ++--
src/fix_multisphere.cpp | 101 ++-
src/fix_multisphere.h | 11 +-
src/fix_multisphere_break.cpp | 324 +++++++++
...operty_atom_dummy.h => fix_multisphere_break.h} | 44 +-
src/fix_multisphere_comm.cpp | 670 ++++++++++++++++++
src/fix_multisphere_comm_I.h | 84 ++-
src/fix_neighlist_mesh.cpp | 5 +-
src/fix_nve.cpp | 4 +-
src/fix_nve_limit.cpp | 8 +-
src/fix_nve_noforce.cpp | 4 +-
src/fix_nve_sph.cpp | 4 +-
src/fix_nve_sph_stationary.cpp | 4 +-
src/fix_nve_sphere.cpp | 6 +-
src/fix_particledistribution_discrete.cpp | 8 +-
src/fix_particledistribution_discrete.h | 5 +
src/fix_planeforce.cpp | 6 +-
src/fix_print.cpp | 4 +-
src/fix_print.h | 2 +-
src/fix_property_atom.cpp | 9 +-
src/fix_property_atom.h | 12 +
src/fix_property_atom_timetracer.cpp | 28 +-
src/fix_property_atom_tracer.cpp | 6 +-
src/fix_property_atom_tracer_stream.cpp | 15 +-
src/fix_property_global.cpp | 6 +-
src/fix_read_restart.cpp | 2 +-
src/fix_region_variable.cpp | 8 +-
src/fix_relax_contacts.h | 2 +
src/fix_respa.cpp | 2 +-
src/fix_rigid.cpp | 8 +-
src/fix_scalar_transport_equation.cpp | 11 +-
src/fix_setforce.cpp | 4 +-
src/fix_sph.cpp | 8 +-
src/fix_sph_density_continuity.cpp | 8 +-
src/fix_sph_density_corr.cpp | 8 +-
src/fix_sph_density_summation.cpp | 8 +-
src/fix_sph_pressure.cpp | 8 +-
src/fix_spring.cpp | 6 +-
src/fix_spring_rg.cpp | 6 +-
src/fix_spring_self.cpp | 4 +-
src/fix_store.cpp | 4 +-
src/fix_store_force.cpp | 2 +-
src/fix_store_state.cpp | 4 +-
src/fix_template_multiplespheres.cpp | 10 +-
src/fix_template_multisphere.cpp | 11 +-
src/fix_template_sphere.cpp | 8 +-
src/fix_template_sphere.h | 7 +
src/fix_viscous.cpp | 6 +-
src/fix_wall.cpp | 6 +-
src/fix_wall_gran.cpp | 218 +++++-
src/fix_wall_gran.h | 50 +-
src/fix_wall_gran_base.h | 62 +-
src/fix_wall_region.cpp | 6 +-
src/fix_wall_region_sph.cpp | 6 +-
src/fix_wall_sph.cpp | 6 +-
src/force.cpp | 4 +-
src/general_container.h | 1 +
src/general_container_I.h | 26 +-
src/global_properties.cpp | 51 +-
src/global_properties.h | 6 +
src/granular_pair_style.h | 3 +-
src/granular_styles.cpp | 11 +-
src/granular_wall.h | 4 +
src/group.cpp | 18 +-
src/group.h | 2 +-
src/image.cpp | 8 +-
src/image.h | 4 +-
src/improper.cpp | 2 +-
src/improper.h | 2 +-
src/improper_hybrid.cpp | 4 +-
src/improper_hybrid.h | 2 +-
src/input.cpp | 10 +-
src/input.h | 8 +-
src/input_mesh_tet.cpp | 58 +-
src/input_mesh_tet.h | 2 +-
src/input_mesh_tri.cpp | 95 ++-
src/input_mesh_tri.h | 6 +-
src/input_multisphere.cpp | 17 +-
src/input_multisphere.h | 2 +-
src/integrate.cpp | 2 +-
src/irregular.cpp | 6 +-
src/kspace.cpp | 4 +-
src/lammps.cpp | 10 +-
src/lammps.h | 2 +-
src/lattice.cpp | 6 +-
src/library.cpp | 6 +-
src/library.h | 2 +-
src/library_cfd_coupling.cpp | 4 +-
src/library_cfd_coupling.h | 2 +-
src/lmptype.h | 2 +-
src/lmpwindows.h | 4 +-
src/main.cpp | 4 +-
src/math_extra.cpp | 4 +-
src/math_extra.h | 6 +-
src/math_extra_liggghts.h | 43 +-
src/math_vector.h | 4 +-
src/memory.cpp | 6 +-
src/memory_ns.h | 2 +-
src/mesh_mover.cpp | 2 +-
src/min.cpp | 6 +-
src/min_cg.cpp | 6 +-
src/min_linesearch.cpp | 2 +-
src/minimize.cpp | 2 +-
src/modify.cpp | 4 +-
src/modify.h | 5 +-
src/modify_liggghts.cpp | 43 +-
src/mpi_liggghts.h | 11 +-
src/multi_node_mesh.h | 3 +
src/multi_node_mesh_I.h | 49 +-
src/multi_node_mesh_parallel_I.h | 34 +-
src/multisphere.cpp | 21 +-
src/multisphere.h | 12 +
src/multisphere_parallel.cpp | 307 ++++++++
src/multisphere_parallel.h | 83 +++
...g_force_implicit.h => multisphere_parallel_I.h} | 79 ++-
src/my_page.h | 2 +-
src/my_pool_chunk.h | 2 +-
src/neighbor.cpp | 9 +-
src/nonspherical_flags.h | 18 +
src/normal_model_hertz.h | 17 +-
src/normal_model_hertz_stiffness.h | 14 +-
src/normal_model_hooke.h | 14 +-
src/normal_model_hooke_hysteresis.h | 16 +-
src/normal_model_hooke_stiffness.h | 10 +-
src/output.cpp | 15 +-
src/pair.cpp | 10 +-
src/pair_gran.cpp | 85 ++-
src/pair_gran.h | 81 ++-
src/pair_gran_base.h | 110 ++-
src/pair_gran_proxy.cpp | 8 +-
src/pair_gran_proxy.h | 3 +-
src/pair_hybrid.cpp | 6 +-
src/pair_hybrid.h | 2 +-
src/pair_hybrid_overlay.cpp | 4 +-
src/pair_soft.cpp | 8 +-
src/pair_sph.cpp | 8 +-
src/pair_sph_artvisc_tenscorr.cpp | 8 +-
src/particleToInsert.cpp | 2 +-
src/particleToInsert_multisphere.cpp | 4 +-
src/pointers.h | 2 +-
src/primitive_wall.h | 2 +-
src/probability_distribution.h | 6 +-
src/properties.cpp | 6 +-
src/{rotate.cpp => random.cpp} | 44 +-
...contact_property_atom_wall_dummy.h => random.h} | 14 +-
src/random_mars.cpp | 4 +-
src/random_mars.h | 4 +-
src/random_park.cpp | 4 +-
src/random_park.h | 4 +-
src/read_data.cpp | 10 +-
src/read_data.h | 2 +-
src/read_dump.cpp | 6 +-
src/read_dump.h | 2 +-
src/read_restart.cpp | 6 +-
src/read_restart.h | 2 +-
src/reader.cpp | 4 +-
src/reader_native.cpp | 4 +-
src/reader_xyz.cpp | 4 +-
src/region.cpp | 6 +-
src/region_block.cpp | 4 +-
src/region_cone.cpp | 6 +-
src/region_cylinder.cpp | 6 +-
src/region_intersect.cpp | 4 +-
src/region_mesh_tet.cpp | 21 +-
src/region_neighbor_list.h | 8 +-
src/region_neighbor_list_I.h | 29 +-
src/region_neighbor_list_definitions.h | 16 +-
src/region_plane.cpp | 6 +-
src/region_prism.cpp | 6 +-
src/region_sphere.cpp | 6 +-
src/region_union.cpp | 4 +-
src/region_wedge.cpp | 6 +-
src/replicate.cpp | 4 +-
src/respa.cpp | 4 +-
src/rolling_model_cdt.h | 4 +-
src/rolling_model_epsd.h | 16 +-
src/rolling_model_epsd2.h | 4 +-
src/rolling_model_epsd3.h | 2 +-
src/rotate.cpp | 4 +-
src/run.cpp | 4 +-
src/set.cpp | 32 +-
src/special.cpp | 4 +-
src/style_contact_model.h | 375 ++++++++++
src/style_fix.h | 6 +
src/style_surface_model.h | 1 +
src/superquadric_flag.h | 7 +-
src/surface_mesh.h | 16 +-
src/surface_mesh_I.h | 2 +-
src/surface_model_default.h | 5 +-
src/surface_model_multicontact.h | 210 ++++++
src/tangential_model_history.h | 32 +-
src/tangential_model_no_history.h | 30 +-
src/thermo.cpp | 40 +-
src/thermo.h | 10 +-
src/timer.cpp | 2 +-
src/tri_mesh.h | 18 +-
src/tri_mesh_I.h | 34 +-
src/universe.cpp | 8 +-
src/universe.h | 2 +-
src/update.cpp | 4 +-
src/utils.h | 4 +-
src/variable.cpp | 6 +-
src/variable.h | 2 +-
src/vector_liggghts.h | 10 +-
src/velocity.cpp | 113 +--
src/velocity.h | 2 +-
src/verlet.cpp | 2 +-
src/version_liggghts.h | 2 +-
src/version_liggghts.txt | 2 +-
src/write_data.cpp | 4 +-
src/write_data.h | 2 +-
src/write_dump.cpp | 2 +-
src/write_restart.cpp | 4 +-
src/write_restart.h | 2 +-
537 files changed, 10205 insertions(+), 2043 deletions(-)
diff --cc debian/changelog
index a3b5ccc,ebd8da5..bde15c0
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,11 -1,85 +1,93 @@@
+ liggghts (3.5.0+repack1-10) unstable; urgency=medium
+
+ * [e2a6253] Better fix for the bug, fixed in previous upload.
+ Thanks, Graham
+
+ -- Anton Gladky <gladk at debian.org> Thu, 19 Jan 2017 18:58:57 +0100
+
+ liggghts (3.5.0+repack1-9) unstable; urgency=medium
+
+ * [a879ac6] Do not fail on mpi-errors. (Closes: #851726)
+
+ -- Anton Gladky <gladk at debian.org> Wed, 18 Jan 2017 22:46:29 +0100
+
+ liggghts (3.5.0+repack1-8) unstable; urgency=medium
+
+ * [2219bae] Fix variable name in d/rules.
+
+ -- Anton Gladky <gladk at debian.org> Fri, 30 Dec 2016 08:26:31 +0100
+
+ liggghts (3.5.0+repack1-7) unstable; urgency=medium
+
+ * [6079250] Disable test on mips64el (unstable).
+
+ -- Anton Gladky <gladk at debian.org> Fri, 30 Dec 2016 00:24:51 +0100
+
+ liggghts (3.5.0+repack1-6) unstable; urgency=medium
+
+ * [96fa01f] Add mips64el to disable_auto_test_archs_mpi in d/rules.
+
+ -- Anton Gladky <gladk at debian.org> Thu, 29 Dec 2016 20:02:34 +0100
+
+ liggghts (3.5.0+repack1-5) unstable; urgency=medium
+
+ [ Graham Inggs ]
+ * [fe1b4d7] Replace OMPI_MCA_orte_rsh_agent by OMPI_MCA_plm_rsh_agent
+ for autopkgtests too
+ * [5037eeb] Allow --oversubscribe for autopkgtests
+
+ -- Anton Gladky <gladk at debian.org> Wed, 28 Dec 2016 19:01:44 +0100
+
+ liggghts (3.5.0+repack1-4) unstable; urgency=medium
+
+ [ Graham Inggs ]
+ * Restrictions: allow-stderr on the tests, for compatibility with current
+ openmpi.
+ * Update autopkgtests with examples from 3.5.0.
+
+ [ Anton Gladky ]
+ * Use --parallel build again
+
+ -- Anton Gladky <gladk at debian.org> Tue, 08 Nov 2016 20:25:41 +0100
+
+ liggghts (3.5.0+repack1-2) unstable; urgency=medium
+
+ * [8031b0e] Do not use parallel build. Fails on some platforms.
+ * [6a2a7ed] Fix autotests.
+
+ -- Anton Gladky <gladk at debian.org> Sat, 05 Nov 2016 15:46:43 +0100
+
+ liggghts (3.5.0+repack1-1) unstable; urgency=medium
+
+ * [784df99] New upstream version 3.5.0+repack1
+ * [4101537] Refresh patches.
+
+ -- Anton Gladky <gladk at debian.org> Thu, 27 Oct 2016 23:04:19 +0200
+
+ liggghts (3.4.0+repack1-2) unstable; urgency=medium
+
+ * [ead3d70] Disable mpi-test on powerpc.
+ * [6492a8e] Apply cme fix dpkg.
+
+ -- Anton Gladky <gladk at debian.org> Wed, 27 Jul 2016 00:44:20 +0200
+
+ liggghts (3.4.0+repack1-1) unstable; urgency=medium
+
+ * [6a5c2a8] Imported Upstream version 3.4.0+repack1
+ * [157da23] Refresh patches.
+ * [9a184e0] Apply cme fix dpkg.
+ * [ea651a2] Update d/copyright.
+
+ -- Anton Gladky <gladk at debian.org> Wed, 15 Jun 2016 22:12:40 +0200
+
+liggghts (3.3.1+repack1-1~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+ * [1771c68] Remove some components for VTK, which are not available
+ in Jessie.
+
+ -- Anton Gladky <gladk at debian.org> Tue, 26 Jan 2016 21:35:38 +0100
+
liggghts (3.3.1+repack1-1) unstable; urgency=medium
* [3697863] Imported Upstream version 3.3.1+repack1
--
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